View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_7 (Length: 447)
Name: NF1548_low_7
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 35 - 433
Target Start/End: Complemental strand, 36899440 - 36899042
Alignment:
| Q |
35 |
atgtaagtaaagtttgacaaataattattatagatttatggtcacgattgtattagagtaaaatttaataattctctagtgattggaagatacataccaa |
134 |
Q |
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| T |
36899440 |
atgtaagtaaagtttgacaaataattattatagatttatggtcacgattgtattagagtaaaatttaataattctctagtgattggaagatacataccaa |
36899341 |
T |
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| Q |
135 |
gtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggtccaacctacagtacctccaacattgtaggtagcagcatgaacaag |
234 |
Q |
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| T |
36899340 |
gtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggtccaacctacagtacctccaacattgtaggtagcagcatgaacaag |
36899241 |
T |
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| Q |
235 |
ctcagagttaagaacaaaaaagcagactagtagaaccaccatactgcctcttcccagagccatgttttctctactagtacttgctagaaagctgtgaaag |
334 |
Q |
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| T |
36899240 |
ctcagagttaagaacaaaaaagcagactagtagaaccaccacactgcctcttcccagagccatgttttctctactagtacttgctagaaagctgtgaaag |
36899141 |
T |
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| Q |
335 |
aaagggatttggatgtaagaaaatttagaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatcttatgggaagttggt |
433 |
Q |
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| T |
36899140 |
aaagggatttggatgtaagaaaatttggaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatcttatgggaagttggt |
36899042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 122 - 421
Target Start/End: Original strand, 37008905 - 37009197
Alignment:
| Q |
122 |
agatacataccaagtgtgtcaccagccctaaatcgttttcctcgagaccacccaaccgtgttaaaggtccaacctacagtacctccaacattgtaggtag |
221 |
Q |
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| T |
37008905 |
agatacataccaagggtatcaccagccctaaagcgttttccattaggccatccaacagtgttaaaggtccaacctccaggacctccaacagtgtaggtag |
37009004 |
T |
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| Q |
222 |
cagcatgaacaagctcagagttaagaacaaaaaagcagactagtagaaccaccatactgcctcttcccagagccatgttttctctactagtacttgctag |
321 |
Q |
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| T |
37009005 |
cagcatgagccaactcagagttaagaacaaaaaagcagactagtagaaccaatgcactgcctcttcccagagccatg-tttctctactattatttgctag |
37009103 |
T |
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| Q |
322 |
aaagctgtgaaagaaagggatttggatgtaagaaaatttagaataatgtggtaaggttttataattgaggaatgagtgaagaggtctgcaagaaatctta |
421 |
Q |
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| T |
37009104 |
aaaactgtgaaagaaaggta-----atgtaa-tgaatttggaatgatgtggtaaggttttataattgaggagtgagtgaagaggcctgcaagaaatctta |
37009197 |
T |
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