View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_8 (Length: 441)
Name: NF1548_low_8
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 4349074 - 4348723
Alignment:
| Q |
13 |
aatatcccaaaagcgaagtgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349074 |
aatatcccaaaagcgaagcgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag |
4348975 |
T |
|
| Q |
113 |
aaataacccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaact |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4348974 |
aaataatccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaact |
4348875 |
T |
|
| Q |
213 |
atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcaatttaccactatact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4348874 |
atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatact |
4348775 |
T |
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| Q |
313 |
ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctag |
364 |
Q |
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| T |
4348774 |
ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctag |
4348723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 25744981 - 25745322
Alignment:
| Q |
13 |
aatatcccaaaagcgaagtgtctcatctcccccagatgaaaccacagttaaaccatctgaactctgcaagacataagagcattagtgtataacttgaaag |
112 |
Q |
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|||||||||||||||||| ||||||||||| || | ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| | |
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| T |
25744981 |
aatatcccaaaagcgaagagtctcatctcctccggctgaaaccactgttaacccatctggactctgcaagacataagagcattagtgta--acttgaatg |
25745078 |
T |
|
| Q |
113 |
aaataacccccttgttaaagtttaagtggtttcattcatgtttatatgttttaacatagttgaagttgatgtcacttgttgaaaacaatcccaagcaact |
212 |
Q |
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|||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| || | |||||||||| ||||| || |
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| T |
25745079 |
aaataatcaccttgataaagtttaagtggtttgattcatgtttatatgttttaacaaagttgaagtttatat--------gaaaacaatctgaagcagct |
25745170 |
T |
|
| Q |
213 |
atattagatgctcttgccaatgaatgattgtactcacattattacatgctttaaaaattcacattggatgattaatcgtctctcaatttaccactatact |
312 |
Q |
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| ||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
25745171 |
aaattagatgctcttgccaatgaatgactgtactcgcattcttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatact |
25745270 |
T |
|
| Q |
313 |
ggtttaagtaattatgacttgaagcatacctgagaaagatggaggactctag |
364 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25745271 |
ggtttaagtaatgatgacttgaagcatacctgagaaagatggaggactctag |
25745322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 18928523 - 18928551
Alignment:
| Q |
334 |
aagcatacctgagaaagatggaggactct |
362 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
18928523 |
aagcatacctgagaaagatggaggactct |
18928551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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