View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1548_low_9 (Length: 419)
Name: NF1548_low_9
Description: NF1548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1548_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 15 - 379
Target Start/End: Original strand, 26268613 - 26268964
Alignment:
| Q |
15 |
ggtgagtgtaaccctttttgtgggcagttttgcatagcaagtatagcagccaaaagttcagcatgaaaggcatttacctaacctaattctgagcaaaacg |
114 |
Q |
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| T |
26268613 |
ggtgagtgtaaccctttttgtgggcagttttgcatagcaagtatagcagccaaaagttcagcatgaaaggcatttacctaacctaattctgagcaaaacg |
26268712 |
T |
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| Q |
115 |
gccaatctagagaccatctccattcctataatgagaagaagctttggaagttttacttccagccatgaaaacaacataaatgatgttgttaataatgatt |
214 |
Q |
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| T |
26268713 |
gccgatgtagagaccatctccattcctatg--gataggca-----------tttacttccagacatgaaaacaacataaatgatgttgttaataatgatt |
26268799 |
T |
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| Q |
215 |
ttccaatggataggcttattttggaatcgcaattgattcattctatactagatagcattaatgatattcaccaagcaagatttaatgacaatcttgcact |
314 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26268800 |
ttccaatggataggcttaatttggaatcgcaattgattcattctataccagatagcattaatgatattcaccaagcaagatttaatgacaatcttgcact |
26268899 |
T |
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| Q |
315 |
gaggtgttgtttttccaaaccatcttgtcattggtttcttcagttgggagagtaatttgttgagc |
379 |
Q |
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| T |
26268900 |
gaggtgttgtttttccaaaccatcttgtcattggtttcttcagttgggagagtaatttgttgagc |
26268964 |
T |
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