View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15490_high_3 (Length: 249)
Name: NF15490_high_3
Description: NF15490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15490_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 4782978 - 4782762
Alignment:
| Q |
18 |
acatggaatgttggatatgaagatcctagaagggtgatccatgcattcaaagttggtttgtctctcactttagcttctctgttgtatttggtggagccac |
117 |
Q |
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| T |
4782978 |
acatggaatgttggatatgaagatcctagaagggttatccatgcattcaaagttggtttgtctctcactttagcttctctgttgtatttggtggagccac |
4782879 |
T |
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| Q |
118 |
tttaccatgagattggacaaagtgcaatttgggctgtcatgactgttgtggttgtgctggagttcactgctggcaagtttctctcttaaatctcacttca |
217 |
Q |
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| T |
4782878 |
tttaccatgagattgggcaaagtgcaatttgggctgtcatgactgttgtggttgtgctggagttcactgctggcaagtttctctcttaaatctcacttca |
4782779 |
T |
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| Q |
218 |
atcttctttatgcaaat |
234 |
Q |
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| T |
4782778 |
atcttctttatgcaaat |
4782762 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 40644896 - 40644964
Alignment:
| Q |
18 |
acatggaatgttggatatgaagatcctagaagggtgatccatgcattcaaagttggtttgtctctcact |
86 |
Q |
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| T |
40644896 |
acatggaaggtgggatatgatgacccaagaagggtgatccatgcattcaaagttggtttatctctcact |
40644964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 40633285 - 40633451
Alignment:
| Q |
21 |
tggaatgttggatatgaagatcctagaagggtgatccatgcattcaaagttggtttgtctctcactttagcttctctgttgtatttggtggagccacttt |
120 |
Q |
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| T |
40633285 |
tggaaggtgggatgtgatgatccaagaagggtgatccatgcattcaaagttggtttatctcttactcttgtatcattgctttatatattggagccactct |
40633384 |
T |
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| Q |
121 |
accatgagattggacaaagtgcaatttgggctgtcatgactgttgtggttgtgctggagttcactgc |
187 |
Q |
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| T |
40633385 |
ttaaagggattggccaaaatgctatttgggctgtcatgactgtcgtggtggttttcgagttcactgc |
40633451 |
T |
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