View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15490_low_1 (Length: 392)
Name: NF15490_low_1
Description: NF15490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15490_low_1 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
| [»] scaffold1049 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0024 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 13844 - 13484
Alignment:
| Q |
17 |
cagttcacatgtaaggcttgctaatgcacgatattcagcttctgagcttgatttggagacgattgactgcttcttggatttccatgaaatgagagaagat |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13844 |
cagttcacatgtaaggcttgctaatgcgcgatattcagcttctgagcttgatttggagacgatcgactgcttcttggatttccatgaaatgagagaagat |
13745 |
T |
|
| Q |
117 |
ccaagaaacacacaataacccgttacagatttcctggttgtaggacaagttgcccaatcagaatctgcaaaaccagaaagtttcaaattagaagttgctg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13744 |
ccaagaaacacacaataacccgttacagatttcctggttgtaggacaagttgcccaatcagaatctgcaaaactagaaagtttcaaattagaagttgctg |
13645 |
T |
|
| Q |
217 |
agtagaataatcctttggtaggggcagttttcagatattgtaaaactctaatagcagcctgatagtgaacttgctgaggtttcgaaacaaattggcttaa |
316 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13644 |
agtagaataatcctttggcaggggcagttttcagatattgtaaaactctaatagcagcctgatagtgaacttgctgaggtttcgaaacaaattggcttaa |
13545 |
T |
|
| Q |
317 |
ttgttgaataacaaaggatatatcaggacgagtagtagttaaataaataagtttgcctatg |
377 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13544 |
ttgttgaacagcaaaggatatatcaggacgagtagtagttaaataaataagtttgcctatg |
13484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1049
Description:
Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 413 - 465
Alignment:
| Q |
84 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
136 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
413 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 19743060 - 19742956
Alignment:
| Q |
84 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacccgttacagatttcctggttgtaggacaagttgcccaatcagaatctg |
183 |
Q |
| |
|
||||||||||| ||||| ||||| | |||||| ||||| ||||||||| | || || | ||| || || ||| |||||| |||||||||||||||| | |
|
|
| T |
19743060 |
tgcttcttggacttccaagaaattaaagaagaaccaagtaacacacaaaatcctgtaatagactttctagtttcaggacaccttgcccaatcagaatcag |
19742961 |
T |
|
| Q |
184 |
caaaa |
188 |
Q |
| |
|
||||| |
|
|
| T |
19742960 |
caaaa |
19742956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 26083297 - 26083349
Alignment:
| Q |
84 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
136 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
26083297 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
26083349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 26107084 - 26107136
Alignment:
| Q |
84 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
136 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
26107084 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
26107136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 4502355 - 4502303
Alignment:
| Q |
84 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
136 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
4502355 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
4502303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 15825907 - 15825855
Alignment:
| Q |
84 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
136 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
15825907 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
15825855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 548886 - 548938
Alignment:
| Q |
84 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
136 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
548886 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
548938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 30279298 - 30279350
Alignment:
| Q |
84 |
tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc |
136 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
30279298 |
tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc |
30279350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University