View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15490_low_3 (Length: 252)
Name: NF15490_low_3
Description: NF15490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15490_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 3083959 - 3083743
Alignment:
| Q |
20 |
caatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaagagatatcttggtgaaggaactaaattattgacttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3083959 |
caatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaagagatatcttggtgaaggaactaaattattgacttt |
3083860 |
T |
|
| Q |
120 |
ctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttataatatggaagaatggaatattcatttactagtaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3083859 |
ctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttataatatggaagaatggaatattcatttactagtaaaa |
3083760 |
T |
|
| Q |
220 |
gaatgcacattgcttat |
236 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3083759 |
gaatgcacattgcttat |
3083743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 3092196 - 3092163
Alignment:
| Q |
199 |
aatattcatttactagtaaaagaatgcacattgc |
232 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
3092196 |
aatattcatttgctagtaaaagaatgcacattgc |
3092163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 41590839 - 41590799
Alignment:
| Q |
130 |
agagactaacttactattttgcaaatttgaaaaactaaatt |
170 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
41590839 |
agagactaaattactattttgcaaatttgaaaaactgaatt |
41590799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 41513868 - 41513824
Alignment:
| Q |
126 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
170 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
41513868 |
tttaagggactaacttgctattttgcaaatttgaaggactaaatt |
41513824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 40213407 - 40213451
Alignment:
| Q |
126 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
170 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| || ||||||||| |
|
|
| T |
40213407 |
tttaagagactaaattacaattttgcaaatttaaataactaaatt |
40213451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University