View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15490_low_5 (Length: 225)
Name: NF15490_low_5
Description: NF15490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15490_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 35851031 - 35851213
Alignment:
| Q |
22 |
actcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattcaacggttacagtt |
121 |
Q |
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| T |
35851031 |
actcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattcaacggttacagtt |
35851130 |
T |
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| Q |
122 |
tctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatggtggcgccat |
204 |
Q |
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| T |
35851131 |
tctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatggtggcgccat |
35851213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 35841409 - 35841593
Alignment:
| Q |
17 |
tcatcactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattcaacggtta |
116 |
Q |
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|||| ||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35841409 |
tcataactcataacttttccgatttga---acggtttctgaaaactctttcaaaacacatcgtccaatcaatacaatcggcttcttcaattcaacggtta |
35841505 |
T |
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| Q |
117 |
cagtttctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatggtggcgccat |
204 |
Q |
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| T |
35841506 |
cagtttctttcccttttcttctcggtttccgcggtcgacctctccgttttggtggttccgacgcaaaatcccccgatggtggcgccat |
35841593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 13314162 - 13313982
Alignment:
| Q |
24 |
tcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattcaacggttacagtttc |
123 |
Q |
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||||||||||| ||||||| |||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||| |
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| T |
13314162 |
tcaaaactttttcgatttggacaacgctttttgaaaactctttcaaaatctatcgtccaatcaacacaatcggcttcttcatttcaacggttacagtttc |
13314063 |
T |
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| Q |
124 |
tttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatggtggcgccat |
204 |
Q |
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||||||||||||||| | |||||||||||||||||||| ||| |||||||| |||||||||||||| |||||| ||||||| |
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| T |
13314062 |
tttctcttttcttctttatttccgcggtcgacctctccttttcggtggttctgacggaggatcccccgatggttgcgccat |
13313982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 13313530 - 13313712
Alignment:
| Q |
22 |
actcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattcaacggttacagtt |
121 |
Q |
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||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||| |
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| T |
13313530 |
actcacaacttttccaatttgaacaacgaattctgaaaactctttcaaaacgtatcgtccaatcaatacaatcggcttattcatttcaacggttccagtt |
13313629 |
T |
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| Q |
122 |
tctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatggtggcgccat |
204 |
Q |
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|||||||||||||||||||| |||||||||| ||| |||| ||| | || || |||| |||||||||| |||||||||||||| |
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| T |
13313630 |
tctttctcttttcttctctgcttccgcggtcaaccactccttttcgatgatttcgacagaggatcccccgatggtggcgccat |
13313712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 13305654 - 13305578
Alignment:
| Q |
22 |
actcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggct |
98 |
Q |
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||||| |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
13305654 |
actcacaacttttctgatttgaacaacgctttctgaaaactctttcaaaacatatcggccaatcaatacaatcggct |
13305578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 13300981 - 13301051
Alignment:
| Q |
22 |
actcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaat |
93 |
Q |
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||||| |||||||| ||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13300981 |
actcataacttttctgatttgaacaatgctttct-aaaactctttcaaaacgtatcgtccaatcaatacaat |
13301051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 13305495 - 13305536
Alignment:
| Q |
52 |
ttctgaaaactctttcaaaacgtatcgtccaatcaatacaat |
93 |
Q |
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| T |
13305495 |
ttctgaaaactctttcaaaacacatcgtccaaccaatacaat |
13305536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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