View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_high_40 (Length: 246)
Name: NF15491_high_40
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 9158610 - 9158376
Alignment:
| Q |
1 |
taaatttataaaaaccttctctattgctacaaagaaatgcaaggaacgagtcaatttaaat----aaacacaatgaaactgaacacaaacctcacgcaat |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
9158610 |
taaatttataaaaaccttctctattgctacaaagaaatgcaaggaacgagtcaattgaaattaataaacacaatgaaactgaacacaaacctcacgcaat |
9158511 |
T |
|
| Q |
97 |
tatgcacaattttaattgttataatatcaattgcaagagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacacatgtggaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9158510 |
tatgcacaattttaattgttataatatcaattgcaagagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacacatgtggaaa |
9158411 |
T |
|
| Q |
197 |
tataaaaattccatatccatttggaatatcaaatt |
231 |
Q |
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| T |
9158410 |
tgtaaaaattccatatccatttggaatatcaaatt |
9158376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 9221036 - 9220830
Alignment:
| Q |
24 |
ttgctacaaagaaatgcaaggaacgagtcaatttaaataaacacaatgaaactgaacacaaacctcacgcaattatgcacaattttaattgttataatat |
123 |
Q |
| |
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|||||||||| || | |||||||| | || ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||| ||||| |
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| T |
9221036 |
ttgctacaaaaaattacaaggaactactccattgaaataaacggaatgaaactgaacagaaacctcacgcaattatgcacaattttagtagttacaatat |
9220937 |
T |
|
| Q |
124 |
caattg---caagagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacacatgtggaaatataaaaattccatatccatttgg |
220 |
Q |
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| T |
9220936 |
ccatggtaacaatagtatttgcatccaatgaatccctttcttcatccttacccggttgcaaaaacacatgtggaaatgtcaaaattccatttccatttgg |
9220837 |
T |
|
| Q |
221 |
aatatca |
227 |
Q |
| |
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||||||| |
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| T |
9220836 |
aatatca |
9220830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 9176515 - 9176339
Alignment:
| Q |
58 |
aaataaacacaatgaaactgaacacaaacctcacgcaattatgcacaattttaattgttataatatcaattg---caagagtatttgcatctgatgaatc |
154 |
Q |
| |
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||||| || ||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||| || | ||| |||||||||||| ||||||| |
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| T |
9176515 |
aaatacacgcaatgaaacagaacacaaacctcacgcaattatgcacaattttagtacttacaatatccatggtcacaatagtatttgcatccaatgaatc |
9176416 |
T |
|
| Q |
155 |
cttttcttcatccctacctggttgcaaaaacacatgtggaaatataaaaattccatatccatttggaatatcaaatt |
231 |
Q |
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| T |
9176415 |
cttttctttatccctacctgggtgcaaagacacatgtggaaatgtaaaaattccatatccatttggaatatccaatt |
9176339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 9203572 - 9203374
Alignment:
| Q |
36 |
aatgcaaggaacgagtcaatttaaataaacacaatgaaactgaacacaaacctcacgcaattatgcacaattttaattgttataatatcaattg---caa |
132 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||| || | ||| |
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| T |
9203572 |
aatgcaaagaactagtcaattgaaatacacacaatgaaactgaacacaaagctcacgcaattatgcacaattttattacttacaatattcatggtaacaa |
9203473 |
T |
|
| Q |
133 |
gagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacacatgtggaaatataaaaattccatatccatttggaatatcaaatt |
231 |
Q |
| |
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|||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||| || | ||||||||||||||||| |||||||| |||| |
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| T |
9203472 |
tagtatttgcatccaatgaatcctttccttcatctctacccggttgcaaaaacacatgtggagatgtcaaaattccatatccattcggaatatccaatt |
9203374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 231
Target Start/End: Original strand, 9113905 - 9114074
Alignment:
| Q |
62 |
aaacacaatgaaactgaacacaaacctcacgcaattatgcacaattttaattgttataatatcaattgcaagagtatttgcatctgatgaatccttttct |
161 |
Q |
| |
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|||||||||||||| |||||||| ||||| ||| ||||| ||||||||| || | |||| | || | || | ||| |||||| |||||||||||||| |
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| T |
9113905 |
aaacacaatgaaacaaaacacaaagctcacacaactatgccaaattttaatggtaacaataaccatggtaacactatctgcatccaatgaatccttttct |
9114004 |
T |
|
| Q |
162 |
tcatccctacctggttgcaaaaacacatgtggaaatataaaaattccatatccatttggaatatcaaatt |
231 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
9114005 |
tcatccttacccggttgcaaaaacacatgtggaaatgtagaaattccatatccatttggaatatcaaatt |
9114074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 9164618 - 9164491
Alignment:
| Q |
104 |
aattttaattgttataatatcaattgcaagagtatttgcatctgatgaatccttttcttcatccctacctggttgcaaaaacacatgtggaaatataaaa |
203 |
Q |
| |
|
||||||||||||| |||||| || | ||||||||||||||| ||||| || || |||||||||| || ||||||||||||||||||||| || | ||| |
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| T |
9164618 |
aattttaattgttgcaatatccatggtaagagtatttgcatccgatgagtctcttccttcatccctgcccggttgcaaaaacacatgtggacatgtcaaa |
9164519 |
T |
|
| Q |
204 |
attccatatccatttggaatatcaaatt |
231 |
Q |
| |
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|||||||| || ||||||||||| |||| |
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| T |
9164518 |
attccatacccttttggaatatccaatt |
9164491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 9147264 - 9147210
Alignment:
| Q |
177 |
tgcaaaaacacatgtggaaatataaaaattccatatccatttggaatatcaaatt |
231 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||| |||| |
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|
| T |
9147264 |
tgcaaaaacacatgtggaaatgtaaaaattccatatacatttggaatatcgaatt |
9147210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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