View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15491_high_9 (Length: 438)
Name: NF15491_high_9
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 36686336 - 36686769
Alignment:
| Q |
1 |
ttgaccgtgttttcaaactctattgttgacccgtaatctcgtctaaatttacgtttttaggtttgtgtttggtgttgatttcatgataaacttgttttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
36686336 |
ttgaccgtgttttcaaactctattgttgacccgtaatctcgtctaaatttacgtttttaggtttgtgtttagtgttgatttgatgataaacttgttttat |
36686435 |
T |
|
| Q |
101 |
agtgaaatcgaagctggcaccgaatttgaccgattcaactagcgacaaaattgaagaaatcggataaactcgtctgattttaagcgaatttgcgattttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36686436 |
agtgaaatcgaagctggcaccgaatttgaccgattcaactagcgacaaaattgaggaaatcggattaactcgtctgattttaagcgaatttgcgattttc |
36686535 |
T |
|
| Q |
201 |
catt-nnnnnnnnntcgggccaaatttgatttcttgccctataagtcatttaacatgtttgaatcttatcattgattttcttaccatagtgatgattcaa |
299 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| |
|
|
| T |
36686536 |
cattaaaaaaaaaatctggccaaatttgatttcttgccctataagtcatttaacatgtttgaatcttatcaataactttcttaccattgtgatgattcaa |
36686635 |
T |
|
| Q |
300 |
ttttacttaataatctttgtgattgtgaccatttccttcttcatcttcttaacctggttcatatttgtttctttccttttcacttttacttgttacnnnn |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36686636 |
ttttacttaataatctttgtgattgtgaccatttccttcttcatcttcttaaccttgttcatatttgtttctttcgttttcacttttacttgttactttt |
36686735 |
T |
|
| Q |
400 |
nnngaaaaatcacttggttagatcctttgcttct |
433 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
36686736 |
tttgaaaaatcacttggttagatcctttgtttct |
36686769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University