View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_1 (Length: 684)
Name: NF15491_low_1
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 336 - 634
Target Start/End: Complemental strand, 10343341 - 10343039
Alignment:
| Q |
336 |
tagtactattcatttgagactaagttgcagtattatttggtcctgcatttgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgac |
435 |
Q |
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||||||||||||||||||||| ||| ||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10343341 |
tagtactattcatttgagactgagtcgcagtgctacttggtcttgcacatgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgac |
10343242 |
T |
|
| Q |
436 |
actgttacgactattgttccgccattatgttgatgaaattgaagacatgttgttgacatcgtcttgatgaggatggagagtggggggaattacgcttctt |
535 |
Q |
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|||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10343241 |
actgttaccactattgttccatcattatgttaatgaaattgaagacatgttgttgacatcgtcttgatgaggatggaga--tgggggaattacgcttctt |
10343144 |
T |
|
| Q |
536 |
ctgctagagattccaccagcttgtgaacattaactata------acctctaagtgatctacttctcttaatcaataaattatcatgtcactgatcataat |
629 |
Q |
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||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10343143 |
ctgctggagattccactagcttgtgaacattaactataactctcacctctaagtgatctacttctcttaatcaataaattatcatgtcactgatcataat |
10343044 |
T |
|
| Q |
630 |
tcata |
634 |
Q |
| |
|
||||| |
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|
| T |
10343043 |
tcata |
10343039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 10343702 - 10343388
Alignment:
| Q |
19 |
ggaattaacaccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcacctatagggg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | | |||||||||| | | |
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| T |
10343702 |
ggaattaacaccaccactactactagtactagttgtactatgaaggattatcattggcatgataacttatcaatcaagagatatatatcacctatatgag |
10343603 |
T |
|
| Q |
119 |
atagttctagtcaaggttcacaaggtgatggaacctctagcagaagatgcataattcct---actcttcattctcgtcaagaagatgtcaacaatgtcaa |
215 |
Q |
| |
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| ||||||||||||||||| ||||| || ||| |||||||||||||| |||| | |||| ||||||| | |||||||||| |||||| |
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| T |
10343602 |
agagttctagtcaaggttcgcaaggcgacgga-cctctagcagaagacgcatgactcctcctactcttcgtcctcgtcaaga------------tgtcaa |
10343516 |
T |
|
| Q |
216 |
caacatatcttttttgatttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacccataataaatgaagttgtt |
315 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10343515 |
caacatgtcttttttgatttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacgcataataaatgaagttgtt |
10343416 |
T |
|
| Q |
316 |
gatgtaggcgcaggaccaagtagtacta |
343 |
Q |
| |
|
||||||||||||||||||| |||||||| |
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|
| T |
10343415 |
gatgtaggcgcaggaccaaatagtacta |
10343388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 94 - 345
Target Start/End: Complemental strand, 10181758 - 10181507
Alignment:
| Q |
94 |
aagagaaacagatcacctataggggatagttctagtcaaggttcacaaggtgatggaacctctagcagaagatgcataattcct---actcttcattctc |
190 |
Q |
| |
|
||||||| |||||||| | ||| || ||||||||||||| |||||||| |||||||||||||||||||||| || |||||||| ||||| ||| ||| |
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| T |
10181758 |
aagagaagtagatcaccaaaaggagaaagttctagtcaagattcacaagctgatggaacctctagcagaagacgcgtaattcctcctactctccatcctc |
10181659 |
T |
|
| Q |
191 |
gtcaagaagatgtcaacaatgtcaacaacatatcttttttgatttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaa |
290 |
Q |
| |
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|||||||||| ||||||||||||||| | |||| ||| |||||||||| |||||| | || ||| ||||||| || |||||||||||||| || |
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| T |
10181658 |
atcaagaagatatcaacaatgtcaaca---tgtcttctttagtttcatcaacttcatggaggtactatatcggtaatagcgtcatttcaactatgttaaa |
10181562 |
T |
|
| Q |
291 |
ccaacccataataaatgaagttgttgatgtaggcgcaggaccaagtagtactatt |
345 |
Q |
| |
|
||||| ||| || ||||||||||||| |||||| ||||| ||||||||||||||| |
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| T |
10181561 |
ccaacacatgatgaatgaagttgttgctgtaggtgcaggtccaagtagtactatt |
10181507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 24 - 293
Target Start/End: Original strand, 10181106 - 10181372
Alignment:
| Q |
24 |
taacaccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcacctataggggatagt |
123 |
Q |
| |
|
|||||||||||||| || || ||||||| ||| |||||| ||| |||| |||| ||||||||||||||||||||||| |||||||||| ||| || ||| |
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|
| T |
10181106 |
taacaccaccactaataatactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagagaagtagatcacctaaaggagaaagt |
10181205 |
T |
|
| Q |
124 |
tctagtcaaggttcacaaggtgatggaacctctagcagaagatgcataattcctactcttcattctcgtcaagaagatgtcaacaatgtcaacaacatat |
223 |
Q |
| |
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| |||||||| ||||||| || ||||||| |||| |||||||| ||||| || | || | || ||| |||||||||||||||| |||||||| |
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| T |
10181206 |
tatagtcaagattcacaaactggtggaaccactagaagaagatgtgtaatttctcttactctctatcctcatcaagatgtcaacaatgt---caacatat |
10181302 |
T |
|
| Q |
224 |
cttttttgatttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaacca |
293 |
Q |
| |
|
||| || |||||||| | |||||| | ||||||| |||||||| ||| ||||||| ||| |||||||| |
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|
| T |
10181303 |
cttcttcagtttcatcatcttcatggaggaacaatattggtaatagtgtcatttcaattatattgaacca |
10181372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 387 - 562
Target Start/End: Original strand, 10181533 - 10181717
Alignment:
| Q |
387 |
cagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttacgactattgttccgccattatgttgatgaaatt---gaagacat |
483 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||| || |||| ||| || || |||| | |||||||||| | |||||||| |
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| T |
10181533 |
cagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgacgctattaccgatatagtacctccatgaagttgatgaaactaaagaagacat |
10181632 |
T |
|
| Q |
484 |
gttg------ttgacatcgtcttgatgaggatggagagtggggggaattacgcttcttctgctagagattccaccagcttgtgaa |
562 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||| || |||||||||| ||||||||||||| ||||| ||||||||||| |
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|
| T |
10181633 |
gttgacattgttgatatcttcttgatgaggatggagagtaggaggaattacgcgtcttctgctagaggttccatcagcttgtgaa |
10181717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 497 - 649
Target Start/End: Complemental strand, 10181282 - 10181124
Alignment:
| Q |
497 |
tcttgatgaggatggagagtggggggaattacgcttcttctgctagagattccaccagcttgtgaacattaactataac------ctctaagtgatctac |
590 |
Q |
| |
|
||||||||||||| |||||| | | |||||| | |||||| |||| | ||||||||| ||||||| || |||||||| || || ||||||||| |
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|
| T |
10181282 |
tcttgatgaggatagagagtaagagaaattacacatcttcttctagtggttccaccagtttgtgaatcttgactataactttctcctttaggtgatctac |
10181183 |
T |
|
| Q |
591 |
ttctcttaatcaataaattatcatgtcactgatcataattcataatactattagtagta |
649 |
Q |
| |
|
||||||| || ||||||||||| | |||||||||| ||||||| ||||| |||||||| |
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|
| T |
10181182 |
ttctcttgattgataaattatcaggccactgatcatcattcatagtactactagtagta |
10181124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 10343009 - 10343192
Alignment:
| Q |
27 |
caccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcacctataggggatagttct |
126 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||| || |||| || ||||||||||||| || ||||||| ||||||| || ||| || |||| | |
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|
| T |
10343009 |
caccactactactattagtagtagttgtactatgaattatgatcagtgacatgataatttattgattaagagaagtagatcacttagaggtgagagttat |
10343108 |
T |
|
| Q |
127 |
agtcaaggttcacaaggtgatggaacctctagcagaagatgcataattcctac-tcttcattctcgtcaagaagatgtcaacaa |
209 |
Q |
| |
|
||| || ||||||||| | ||||| ||| ||||||||| || ||||||| | ||| ||| ||| |||||| ||||||||||| |
|
|
| T |
10343109 |
agttaatgttcacaagctagtggaatctccagcagaagaagcgtaattcccccatctccatcctcatcaagacgatgtcaacaa |
10343192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 495
Target Start/End: Original strand, 10343372 - 10343523
Alignment:
| Q |
347 |
atttgagactaagttgcagtattatttggtcctgcatttgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttacgac |
446 |
Q |
| |
|
||||||||| ||| | |||| ||||||||||||| | || ||||||||||| | || ||| |||||||| |||||| |||||| ||| | |||| || |
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|
| T |
10343372 |
atttgagacagagtagtagtactatttggtcctgcgcctacatcaacaacttcatttattatgcgttggttcaacatagttgaaataacattattaccac |
10343471 |
T |
|
| Q |
447 |
tattgttccgccattatgttgatgaaat---tgaagacatgttgttgacatc |
495 |
Q |
| |
|
||||||| | |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
10343472 |
tattgttacaccatgatgttgatgaaatcaaaaaagacatgttgttgacatc |
10343523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 10343203 - 10343309
Alignment:
| Q |
232 |
atttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacccataataaatgaagttgttgatgtaggcgcaggac |
331 |
Q |
| |
|
||||||| ||||| ||| || |||||||||||||| | ||| |||||| |||||| |||||||| ||| || | ||||||||||| || | | ||| ||| |
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|
| T |
10343203 |
atttcattaacataatgatggaacaatagtggtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcatgtgcaagac |
10343302 |
T |
|
| Q |
332 |
caagtag |
338 |
Q |
| |
|
||||||| |
|
|
| T |
10343303 |
caagtag |
10343309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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