View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_10 (Length: 490)
Name: NF15491_low_10
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 475
Target Start/End: Original strand, 9140184 - 9140636
Alignment:
| Q |
16 |
atggcctatttcagtgtcaaagtgacgcatcaacctatgtaacgacgactaatcaaagttnnnnnnntgttctataatgtgccggcaacttaagctgatt |
115 |
Q |
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| T |
9140184 |
atggcctatttcagtgtcaaagtgacgcatcaacctatgtaacgacgactaatcaaagttaaaaaaatgttttataatgtgccggcaacttaagctgatt |
9140283 |
T |
|
| Q |
116 |
tcattacaatttctttacacttgcactctactatgctagcacgccacttctctatcatcaatgtcaaccatattctttctttaattgccccctaagtttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9140284 |
tcattacaatttctttacacttgcactctactatgctagcacgccacttctctatcatcaatgtcaaccatattctttctttaattgccccctaa-tttt |
9140382 |
T |
|
| Q |
216 |
aatttgtctcttttaatttcctgattagatgatatctaatcatgaatcatacctttcagctacctcctaatcctattatgtcccttaaattttaaaccat |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
9140383 |
aatttgtctcttttaatttcccgattagatgatatctaatcatgaatcatacctttcagctacc------tcctattatgtcccttacattttaaaccat |
9140476 |
T |
|
| Q |
316 |
gctataaatgttagcatagcataacttttcacaatttcatacttcaaaaccattttcctcagaagaaaatactgcacagcacataaactctagatggaga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9140477 |
gctataaatgttagcatagcataacttttcacaatttcatacttcaaaaccattttcctcagaagaaaatactgcacagcacataagctctagatggaga |
9140576 |
T |
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| Q |
416 |
aactgtttaagattaaaacaacgttcttgaagtttctatctaaacaaccaccagtgtctt |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9140577 |
aactgtttaagattaaaacaacgttcttgaagtttctatctaaacaaccaccagtgtctt |
9140636 |
T |
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