View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15491_low_11 (Length: 463)
Name: NF15491_low_11
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 3652667 - 3652224
Alignment:
| Q |
1 |
tatgaatgaattgaatcatagtcaataaatctttcaccgatttgatttctcaaaatgttttgcttatgggcaacgctttgcttttatgagcacacattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3652667 |
tatgaatgaattgaatcatagtcaataaatctttcaccgatttgatttctcaaaatgttttgcttataggcaacgctttgcttttatgagcacacattaa |
3652568 |
T |
|
| Q |
101 |
taaccttaacctattgtttcttgtatgtaaggttgaggggaaaggatcaagaactgaagaagtaggaagcaaaagtcttggagcaccaggtaatttgtta |
200 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3652567 |
tcaccgtaacctattgtttcttgtatgtaaggttgaggggaaaggatcaagaactgaagaagtaggaagcaaaagtcttgaagcaccaggtaatttgtta |
3652468 |
T |
|
| Q |
201 |
agaagtttctcctcgtctatctatatcaataatataattactttgacttgattacgtgacaaactaactgcaaactatatctcttcaattcggcacataa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3652467 |
agaagtttctcctcgtctatctatatcaataatataattactttgacttgattacatgacaaactaactgcaaactatatctcttcgattcggcacataa |
3652368 |
T |
|
| Q |
301 |
atttcaaatattgtgtacccattagaagtatatatggcttaaaaccactttaaacatgtatttatttcttaagtaatgtttctgtttggatttgttttag |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3652367 |
atttcaaatattgtgtacccatatgaagtatatatggcttaaaaccactttaaacatgtatgtatttcttaagtaatgtttctgtttggatttgttttag |
3652268 |
T |
|
| Q |
401 |
gaactcctaatagtgacatctctaacaagaatactaacagtacc |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3652267 |
gaactcctaatagtgacatctctaacaagaatactaatagtacc |
3652224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 34851128 - 34851195
Alignment:
| Q |
128 |
taaggttgaggggaaaggatcaagaactgaagaagtaggaagcaaaagtcttggagcaccaggtaatt |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
34851128 |
taaggttgaggggagaggatcaagaactcaagaagtgggaagcaaaaatcttggagcaacaggtaatt |
34851195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 3511131 - 3511183
Alignment:
| Q |
144 |
ggatcaagaactgaagaagtaggaagcaaaagtcttggagcaccaggtaattt |
196 |
Q |
| |
|
|||||||||| | ||||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
3511131 |
ggatcaagaattcaagaagtgggaaaaaaaagtcttggaacaccaggtaattt |
3511183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University