View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_12 (Length: 443)
Name: NF15491_low_12
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 433
Target Start/End: Complemental strand, 24345973 - 24345539
Alignment:
| Q |
21 |
acctcccattcctccgcctccgttcctccccacccctccgccaacatttccaatccacctccactttcaacttcaaacccctcaaatcaattcacac--- |
117 |
Q |
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| T |
24345973 |
acctcccattcctccgcctccgttcctccccacccctccgccaacattcccaatccacctccactttcaacttcaaacccctcaaatcaattcacacgcc |
24345874 |
T |
|
| Q |
118 |
------------------acccctcatttcaaagcgccacactctcaccgttaaagcctcatcagcctccatcacaccagcttcatcaccagcaccacca |
199 |
Q |
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||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||| | |
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| T |
24345873 |
ccccatttccattttctcacccctcatttcaaaacgccacactctcaccgttagagcttcatcagcctccatcacaccagcttcatctccatcaccagct |
24345774 |
T |
|
| Q |
200 |
ccagctccagctcaaccatggcaaggcgccgccataaaaccactcatagcatcaatcctcaccggagtaatcctctggttcgttccaacccctgaaggtg |
299 |
Q |
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|| | ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
24345773 |
ccgccaccagctcaaccttggcaaggcgccgccattaaaccacttatagcatcaatcctcaccggagtaatcctctggtttgttccaactcctgaaggtg |
24345674 |
T |
|
| Q |
300 |
tatcccgcaacgcgtggcaactactcgcaatcttcctcggaacaatcgtcggaatcatcacacaaccactcccactcggcgccgtggcaatcct-ggttt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| |
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| T |
24345673 |
tatcccgcaacgcgtggcaactactcgcaatcttcctcggaacaatcgttggaatcatcacacaaccactcccactcggcgctgtggcaattctaggttt |
24345574 |
T |
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| Q |
399 |
aggagtttcagttctcaccaaaacccttccctttg |
433 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
24345573 |
aggagtttcagttctcaccaaaacccttccctttg |
24345539 |
T |
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