View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_14 (Length: 433)
Name: NF15491_low_14
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 26389185 - 26388781
Alignment:
| Q |
8 |
atgtcgaagaatatgggattaagaaagtatttctttgatataattgttttattaatatatactccattaaatacaaaattgcatgttgttatacatgtcg |
107 |
Q |
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||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26389185 |
atgtcaaataatatggggttaagaaagtatttctttgatataattgttttattaatatatactccataaaatacaaaattgcatgttgttatacatgtcg |
26389086 |
T |
|
| Q |
108 |
tgtggctttcacgtgttaagttgttcgtgttgtataaaagtactcatacacaaattttaatataaannnnnnnctttataaactttttaacaaatcctta |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||| |
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| T |
26389085 |
tgtggctttcgcgtgttaagttgttcgtgttgtataaaagtactcatatccaaatttcaatataaatttttttcttta--aactttttaacaaatcctta |
26388988 |
T |
|
| Q |
208 |
aaattagggcacctattaatattttctctgaaaaatttgtatacgtttcccgcgtattccaccgacttcattagttaatcctaaatccaagcttcgttca |
307 |
Q |
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| T |
26388987 |
aaattagggcacctattaatattttctctaaaaaatttgtatacgtttcccgcgtattccaccgacttcattagttaatcctaaatccaagcttcgttca |
26388888 |
T |
|
| Q |
308 |
tattgagcatcttagaatatttaacttattcacaaaagtatcacataaaagaaagaatatataacagaataatttccacgtacgatttcttaaaattctg |
407 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26388887 |
tattgagcattttagaatatttaacttattcacaaaagtctcacatcaaagaaagaatatataacagaataatttccacgtacgatttcttaaaattctg |
26388788 |
T |
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| Q |
408 |
tatattc |
414 |
Q |
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| T |
26388787 |
tatattc |
26388781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 21031876 - 21032266
Alignment:
| Q |
17 |
aatatgggattaagaaagtatttctttgatataattgttttattaatatatactccattaaatacaaaattgcatgttgttatacatgtcgtgtggcttt |
116 |
Q |
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|||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21031876 |
aatatgagattaaaaaagtatttctttggtataattgttttattaatatatactccattaaatacaaaattgcacgttgttatacatgtcgtgtggcttt |
21031975 |
T |
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| Q |
117 |
cacgtgttaagttgttcgtgttgtataaaagtactcatacacaaattttaatataaannnnnnnctttataaactttttaacaaatccttaaaattaggg |
216 |
Q |
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| T |
21031976 |
cgtgtgttaagttgttcgtgttgtataaaagtactcatacacaaattttaatataaat-------tttttaaactttttaacaaatccttaaaattaggg |
21032068 |
T |
|
| Q |
217 |
cacctattaatattttctctgaaaaatttgtatacgtttcccgcgtattccaccgacttcattagttaatcctaaatccaagcttcgttcatattgagca |
316 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21032069 |
cacctattaatattttctctaaaaattttgtatacgtttcccgcgtattgcaccgacttcattagttaatcctaaatccaagcttcgttcatattgagca |
21032168 |
T |
|
| Q |
317 |
tcttagaatatttaacttattcacaaaagtatcacataaaagaaagaatatataacagaataatttccacgtacgatttcttaaaattctgtatattc |
414 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21032169 |
tcttagaatatttaacttattcacaaaggtatcacatcaaagaaagaatatataacagaataatttccacgtacgatttcttaaaattctgtatattc |
21032266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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