View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_15 (Length: 432)
Name: NF15491_low_15
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_15 |
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| [»] scaffold0073 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 7086624 - 7086224
Alignment:
| Q |
18 |
atttcagctatcattgtcattgtaataggagtgattgctattagtctggtaaatgcttctgtaaggagaaagctagcctttgtggaaaatgctttggaaa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
7086624 |
atttcagctatcattgtcattgtaataggagtgattgctattagtctggtaaatgcttccgtaaggagaaagctagcatttgtggaaaatgctttggaaa |
7086525 |
T |
|
| Q |
118 |
gtatgtgttcaagctcttctagatcaggtgtaccagccacaggtaaactcattctttttgattctcaatcttcaccggattggatcagcaatccagaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7086524 |
gtatgtgttcaagctcttctagatcaggagcaccagccacaggtaaactcattctttttgattctcaatcttcaccggattggatcagcaatccagaaaa |
7086425 |
T |
|
| Q |
218 |
cttgctcaacaaggcatctgaaatcggtgaaggagtgtttggaacagttttcaaagttccattgggatcacaacaaggaagaaatgttgcaatcaagaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7086424 |
cttgctcaacaaggcatctgaaatcggtgaaggagtgtttggaacagttttcaaagttccattgggatcacaacaaggaagaaatgttgcaatcaagaaa |
7086325 |
T |
|
| Q |
318 |
cttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgccagacatccaaatttgattgcattgaaaggat |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
7086324 |
cttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgctagacatccaaatttgattgcgttgaaaggat |
7086225 |
T |
|
| Q |
418 |
a |
418 |
Q |
| |
|
| |
|
|
| T |
7086224 |
a |
7086224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 177 - 418
Target Start/End: Original strand, 7044621 - 7044862
Alignment:
| Q |
177 |
gattctcaatcttcaccggattggatcagcaatccagaaaacttgctcaacaaggcatctgaaatcggtgaaggagtgtttggaacagttttcaaagttc |
276 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7044621 |
gattctcaatccacactggattggatcagcaatccagaaaacttgctcaacaaggcatctgaaatcggtgaaggagtgtttggaacagttttcaaagttc |
7044720 |
T |
|
| Q |
277 |
cattgggatcacaacaaggaagaaatgttgcaatcaagaaacttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattct |
376 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7044721 |
cattgggatcacaacaaggaagaaatgttgcaatcaagaaacttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattat |
7044820 |
T |
|
| Q |
377 |
aggaaacgccagacatccaaatttgattgcattgaaaggata |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7044821 |
aggaaacgccagacatccaaatttgattgcgttgaaaggata |
7044862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 195 - 418
Target Start/End: Original strand, 7000342 - 7000565
Alignment:
| Q |
195 |
gattggatcagcaatccagaaaacttgctcaacaaggcatctgaaatcggtgaaggagtgtttggaacagttttcaaagttccattgggatcacaacaag |
294 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| || ||||||||||||| |
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| T |
7000342 |
gattggatcagcaatccagaaaactcgctaaacaaggcatctgaaattggtgaaggagtgtttcgaacaattttcaaagttccgttaggatcacaacaag |
7000441 |
T |
|
| Q |
295 |
gaagaaatgttgcaatcaagaaacttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgccagacatcc |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7000442 |
gaagaaatgttgcaatcaagaaacttatcacatcaaacatacttcaatatctagaagacttcgacagggaagttagaattctaggcaacgccagacatcc |
7000541 |
T |
|
| Q |
395 |
aaatttgattgcattgaaaggata |
418 |
Q |
| |
|
||||||||| || | ||||||||| |
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|
| T |
7000542 |
aaatttgatagcgtcgaaaggata |
7000565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 195 - 418
Target Start/End: Original strand, 7046213 - 7046436
Alignment:
| Q |
195 |
gattggatcagcaatccagaaaacttgctcaacaaggcatctgaaatcggtgaaggagtgtttggaacagttttcaaagttccattgggatcacaacaag |
294 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| || ||||||||||||| |
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|
| T |
7046213 |
gattggatcagcaatccagaaaactcgctaaacaaggcatctgaaattggtgaaggagtgtttcgaacaattttcaaagttccgttaggatcacaacaag |
7046312 |
T |
|
| Q |
295 |
gaagaaatgttgcaatcaagaaacttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgccagacatcc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7046313 |
gaagaaatgttgcaatcaagaaacttatcacatcaaacatacttcaatatctagaagacttcgacagggaagttagaattctaggcaacgccagacatcc |
7046412 |
T |
|
| Q |
395 |
aaatttgattgcattgaaaggata |
418 |
Q |
| |
|
||||||||| || | ||||||||| |
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|
| T |
7046413 |
aaatttgatagcgtcgaaaggata |
7046436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 7035329 - 7035474
Alignment:
| Q |
30 |
attgtcattgtaataggagtgattgctattagtctggtaaatgcttctgtaaggagaaagctagcctttgtggaaaatgctttggaaagtatgtgttcaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
7035329 |
attgtcattgtaataggagtgattgctattagtctggtaaatgcttctgtaaggagaaagctagcatttgtggaaaatgctttggaaagcatgtgttcaa |
7035428 |
T |
|
| Q |
130 |
gctcttctagatcaggtgtaccagccacaggtaaactcattcttttt |
176 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||| |||||||||| |
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|
| T |
7035429 |
gctcttctagat-aggatcaccagccagaggtaaacacattcttttt |
7035474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 7004059 - 7004155
Alignment:
| Q |
318 |
cttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgccagacatccaaatttgattgcattgaaag |
414 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||| |||| ||||||||||||||||| || |||||||| | || ||||| |||||||||| |
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|
| T |
7004059 |
cttatcacatcaaacatacttcaatttctagaagtctttgacaatgaagttagaattctaggcaaagccagacaccaaagtttgacagcattgaaag |
7004155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 7019417 - 7019513
Alignment:
| Q |
318 |
cttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgccagacatccaaatttgattgcattgaaag |
414 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||| |||| ||||||||||||||||| || |||||||| | || ||||| |||||||||| |
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|
| T |
7019417 |
cttatcacatcaaacatacttcaatttctagaagtctttgacaatgaagttagaattctaggcaaagccagacaccaaagtttgacagcattgaaag |
7019513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 7049930 - 7050026
Alignment:
| Q |
318 |
cttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgccagacatccaaatttgattgcattgaaag |
414 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||| |||| ||||||||||||||||| || |||||||| | || ||||| |||||||||| |
|
|
| T |
7049930 |
cttatcacatcaaacatacttcaatttctagaagtctttgacaatgaagttagaattctaggcaaagccagacaccaaagtttgacagcattgaaag |
7050026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 7002453 - 7002549
Alignment:
| Q |
318 |
cttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgccagacatccaaatttgattgcattgaaag |
414 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||| |||| ||||||||||||| ||| || |||| ||| | || ||||| |||||||||| |
|
|
| T |
7002453 |
cttatcacatcaaacatacttcaatttctagaagtctttgacactgaagttagaattccaggcaaagccaaacaccaaagtttgacagcattgaaag |
7002549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 7048324 - 7048420
Alignment:
| Q |
318 |
cttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattctaggaaacgccagacatccaaatttgattgcattgaaag |
414 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||| |||| ||||||||||||| ||| || |||| ||| | || ||||| |||||||||| |
|
|
| T |
7048324 |
cttatcacatcaaacatacttcaatttctagaagtctttgacactgaagttagaattccaggcaaagccaaacaccaaagtttgacagcattgaaag |
7048420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 177 - 418
Target Start/End: Original strand, 13454 - 13695
Alignment:
| Q |
177 |
gattctcaatcttcaccggattggatcagcaatccagaaaacttgctcaacaaggcatctgaaatcggtgaaggagtgtttggaacagttttcaaagttc |
276 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13454 |
gattctcaatccacactggattggatcagcaatccagaaaacttgctcaacaaggcatctgaaatcggtgaaggagtgtttggaacagttttcaaagttc |
13553 |
T |
|
| Q |
277 |
cattgggatcacaacaaggaagaaatgttgcaatcaagaaacttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13554 |
cattgggatcacaacaaggaagaaatgttgcaatcaagaaacttatcacatcaaacattcttcaatatccagaagacttcgacagggaagttagaattat |
13653 |
T |
|
| Q |
377 |
aggaaacgccagacatccaaatttgattgcattgaaaggata |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13654 |
aggaaacgccagacatccaaatttgattgcgttgaaaggata |
13695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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