View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_19 (Length: 422)
Name: NF15491_low_19
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 35356858 - 35356465
Alignment:
| Q |
18 |
acttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaacacagttgcagcagctaggctacttccatctacaacttttatcttcaattg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35356858 |
acttgcctcgaagaagcacttgatttgtccctttggggatgttgttcaacacagttgcagcagctaggctacttccatctacaacttttatcttcaattg |
35356759 |
T |
|
| Q |
118 |
tggtaaccttccaatataaagttcacagtgtgcattcagctgatgtttctgcacccatcaaggttattcaaatcaaaaatcatca-tctacttcgaattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
35356758 |
tggtaaccttccaatataaagttcacagtgtgcattcagctgatgtttctgcacccatcatggttattcaaatcaaaaatcatcattctacttcgaattc |
35356659 |
T |
|
| Q |
217 |
cataaagctatatttcagatttatcctatttatcggaacgtattttttgatgacacaaatctatcgaaacatattttcggatttccttttttgtgctaat |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35356658 |
cataaagctatatttcagatttatcctatttatcggaacgtattttttgatgacacaaatctatcgaaacatattttcggatttccttttttgtgctaat |
35356559 |
T |
|
| Q |
317 |
ctatcggattccatccttcgaatgac--nnnnnnnnngggttgaacggtttgagctccctaaacaaataaggtcattacttttctcaccctttg |
408 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
35356558 |
ctatcggattccatccttcgaatgactttttttttttgggttgaacgatttgagctccctaaacaaataaggtcgttacttttctcatcctttg |
35356465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 35382071 - 35381859
Alignment:
| Q |
18 |
acttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaacacagttgcagcagctaggctacttccatctacaacttttatcttcaattg |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35382071 |
acttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaacacagttgcagcagctaggctacttccatctacaacttttatcttcaattg |
35381972 |
T |
|
| Q |
118 |
tggtaaccttccaatataaagttcacagtgtgcattcagctgatgtttctgcacccatcaaggttattcaaatcaaaaatcatca-tctacttcgaattc |
216 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
35381971 |
tgggaaccttcgaatataaagttcacagtgtgcattcagctgatgtttctgcacccatcatggttattcaaatcaaaaatcatcattctacttcgaattc |
35381872 |
T |
|
| Q |
217 |
cataaagctatat |
229 |
Q |
| |
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||||||||||||| |
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| T |
35381871 |
cataaagctatat |
35381859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 35372082 - 35371883
Alignment:
| Q |
18 |
acttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaacacagttgcagcagctaggctacttccatctacaacttttatcttcaattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35372082 |
acttgcctcgaagaagcacttgatttgtccctttgggaatgttgttcaacacagttgcagcagctaggctacttccatctacaacttttatcttcaattg |
35371983 |
T |
|
| Q |
118 |
tggtaaccttccaatataaagttcacagtgtgcattcagctgatgtttctgcacccatc-aaggttattcaaatcaaaaatcatca-tctacttcgaatt |
215 |
Q |
| |
|
||||||||||||||||||| ||||| | || |||| |||||||| ||||||| ||||| |||||||||||||| ||||||||| | ||||||||||||| |
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| T |
35371982 |
tggtaaccttccaatataatgttcatggcgttcattaagctgatgattctgcatccatcaaaggttattcaaataaaaaatcattattctacttcgaatt |
35371883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 19628650 - 19628769
Alignment:
| Q |
32 |
agcacttgatttgtccctttgggaatgttgttcaacacagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaa |
131 |
Q |
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|
||||||||||| |||||||||||||||||||| | |||||| ||| || ||| |||||| |||||||||||||| ||||||| | ||| | |||| ||| |
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| T |
19628650 |
agcacttgattggtccctttgggaatgttgttaagcacagtagcaacaactaagctactaccatctacaactttaatcttcagatttggaagcctttcaa |
19628749 |
T |
|
| Q |
132 |
tataaagttcacagtgtgca |
151 |
Q |
| |
|
|||||| | | ||||||||| |
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| T |
19628750 |
tataaactgcgcagtgtgca |
19628769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 19685975 - 19685856
Alignment:
| Q |
32 |
agcacttgatttgtccctttgggaatgttgttcaacacagttgcagcagctaggctacttccatctacaacttttatcttcaattgtggtaaccttccaa |
131 |
Q |
| |
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||||||||||| ||||| |||||||||||||| | |||||| ||| || ||| |||||| |||||||||||||| ||||||| | | | | |||| ||| |
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| T |
19685975 |
agcacttgattggtcccattgggaatgttgttaagcacagtagcaacaactaagctactaccatctacaactttaatcttcagattttgaagcctttcaa |
19685876 |
T |
|
| Q |
132 |
tataaagttcacagtgtgca |
151 |
Q |
| |
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|||||||| | ||||||||| |
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|
| T |
19685875 |
tataaagtgcgcagtgtgca |
19685856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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