View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15491_low_2 (Length: 680)

Name: NF15491_low_2
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15491_low_2
NF15491_low_2
[»] chr3 (1 HSPs)
chr3 (13-664)||(5364785-5365439)


Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 13 - 664
Target Start/End: Original strand, 5364785 - 5365439
Alignment:
Q  13 atcatcgatataatcaaatcctttattctattgtctagaagattgtttaaagccataaagagccttatatagattgcaaactaattcctctttacctcta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5364785 atcattgatataatcaaatcctttattctattgtctagaagattgtttaaggccataaagagccttatatagattgcaaactaattgctctttacctcta 5364884  T
Q  113 aattcaaaactcttagatat----atcatatttgtttctttgagctcactatacaaaaatgaannnnnnnacatccatgtagtccaactctaagtcaaat 208  Q
    |||||||||| |||||||      |||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  5364885 aattcaaaacccttagattgtttcatcatatttgtttcttcgagctcactatacaaaaatgaatttttttacatccatgtagtccaactctaagtcaaat 5364984  T
Q  209 tcagctaccatggcacacaaaattgtgactgctttgtgtttaacaatattataagacaccattgaaaattgaaatcagttccctccttttttaaagcctt 308  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  5364985 tcagctaccatggcacacaaaactgtgactgctttgtgtttaacaatattacgagacaccattgaaaattgaaatcaattccctccttttttaaagcctt 5365084  T
Q  309 gagaaataagttgtgccttaaatcttccttgtcaaacttgctgaatgccttcctttttctcgaagatccattcacagctaaccagccttgaactcttaac 408  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5365085 gagaaataagttgtgccttaaatcttccttgtccaacttgctgaatgccttcctttttctcgaagatccattcgcagctaaccagccttgaactcttaac 5365184  T
Q  409 tataaagcaagtannnnnnnnnnatcataaagacacttaatctcttttttcattcatagtcttaagacatttatcattctctttacatgcaaaagaagct 508  Q
    |||||||||||||          |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5365185 tataaagcaagta-tttttttttatcataaagagacttaatctcttttttcattcatagtcttaagacatttatcattctctttacatgcaaaagaagct 5365283  T
Q  509 ccaacgctttttggttcttccaaaatctcactagatgcttgcagctacaagagaatatgcaaccaatttagaaacttgtttttcctcatcagaaacttct 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  5365284 ccaacgctttttggttcttccaaaatctcactagatgcttgcagctacaagagaatatgcaaccaatttagaaacttgttgttcctcatctgaaacttct 5365383  T
Q  609 tcctcaagcaaccgatttacagtttgaatttcttctagtttgtcactagaaccaac 664  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5365384 tcctcaagcaaccgatttacagttcgaatttcttctagtttgtcactagaaccaac 5365439  T

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