View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_20 (Length: 417)
Name: NF15491_low_20
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 34407115 - 34407520
Alignment:
| Q |
1 |
gtgtggaaatacaacaacaaaggcatttatatgataaagtctgcatactagtccgcaatggaaacactcattgacaatgaggagtatcgaatttaaggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34407115 |
gtgtggaaatacaacaacaaaggcatttatatgataaagtctgcatactagtccgcaatggaaacactcattgacaatgaggagtatcgaatttaaggtg |
34407214 |
T |
|
| Q |
101 |
attggagtaaactatagagctt---acaaatacctcaaagagttaaaagatttttgtggagagtatcgagaggatgtcttccaacaagagaccgactaca |
197 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34407215 |
attggagtaaactatatagcttcttacaaatacctcaaagagttaaaagatttttgtggagagtagcgagaggatgtcttccaacaagagaccgactaca |
34407314 |
T |
|
| Q |
198 |
atggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatcactacgaaaatgaatggcgtttgttcctcggttgcagaaagcctaaggaa--- |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34407315 |
atggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatcactactaaaatgaatggcatttgttcctcggttgcagaaagcctaaggaagta |
34407414 |
T |
|
| Q |
295 |
-aggagacgattggttcgtggtcacatattaattctttgatgttaatcgttggcgactttatatctcttttattcatcatcttgtcaaacttgcaaccac |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34407415 |
tgggagacgattggttcgtggtcacatattaattctttgatgttaatcgttggcgactttatatctcttttattcatcatcttgtcaaacttgcaaccac |
34407514 |
T |
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| Q |
394 |
ataaat |
399 |
Q |
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|||||| |
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| T |
34407515 |
ataaat |
34407520 |
T |
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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 55 - 244
Target Start/End: Original strand, 2422098 - 2422287
Alignment:
| Q |
55 |
gcaatggaaacactcattgacaatgaggagtatcgaatttaaggtgattggagtaaactatagagcttacaaatacctcaaagagttaaaagatttttgt |
154 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||| |||||||| |||| |||| ||||| | ||||| ||||||||||||| ||| |||| |
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| T |
2422098 |
gcaatggaaacactcattgataatgagaagtatcgaattccgagtgattggggtaagctatgaagcttgaagataccacaaagagttaaaatattattgt |
2422197 |
T |
|
| Q |
155 |
ggagagtatcgagaggatgtcttccaacaagagaccgactacaatggaaaggtgttcaatgtacatatgcatgtcctttttgtaaaaatc |
244 |
Q |
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|| |||| || ||| || ||| ||||||| || | | ||| | |||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
2422198 |
ggcgagttgtgaaaggttgcctttcaacaagggatatatttcaaagaaaaggtgttcaatgtacaaatgcatgtcctttttgtgaaaatc |
2422287 |
T |
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