View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15491_low_21 (Length: 415)

Name: NF15491_low_21
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15491_low_21
NF15491_low_21
[»] chr1 (6 HSPs)
chr1 (1-407)||(25589633-25590045)
chr1 (274-407)||(50780345-50780478)
chr1 (274-407)||(44540449-44540582)
chr1 (367-405)||(36617847-36617885)
chr1 (118-172)||(6668365-6668419)
chr1 (116-188)||(25724468-25724540)
[»] chr4 (11 HSPs)
chr4 (274-407)||(6680787-6680920)
chr4 (264-407)||(25171115-25171258)
chr4 (282-407)||(5724939-5725064)
chr4 (274-407)||(50912839-50912972)
chr4 (357-405)||(20290481-20290529)
chr4 (345-405)||(31355658-31355718)
chr4 (345-405)||(53977836-53977896)
chr4 (345-405)||(27187118-27187178)
chr4 (137-188)||(10383550-10383601)
chr4 (132-174)||(48480155-48480197)
chr4 (132-188)||(32108190-32108246)
[»] chr7 (4 HSPs)
chr7 (275-404)||(8266764-8266893)
chr7 (270-407)||(295172-295309)
chr7 (274-407)||(35895137-35895270)
chr7 (274-404)||(43088034-43088164)
[»] chr5 (2 HSPs)
chr5 (276-403)||(22663890-22664017)
chr5 (345-405)||(10275516-10275576)
[»] chr8 (3 HSPs)
chr8 (278-407)||(37185883-37186011)
chr8 (274-407)||(37790187-37790320)
chr8 (345-405)||(1287806-1287866)
[»] chr2 (7 HSPs)
chr2 (274-407)||(296601-296734)
chr2 (274-407)||(29961250-29961383)
chr2 (115-188)||(42560405-42560478)
chr2 (125-188)||(39791349-39791412)
chr2 (345-387)||(13270146-13270188)
chr2 (134-188)||(14392302-14392356)
chr2 (345-403)||(17256261-17256319)
[»] chr3 (4 HSPs)
chr3 (282-407)||(18648709-18648834)
chr3 (274-407)||(11747906-11748039)
chr3 (345-405)||(9698560-9698620)
chr3 (345-387)||(22930925-22930967)
[»] scaffold0336 (1 HSPs)
scaffold0336 (274-407)||(389-522)
[»] chr6 (2 HSPs)
chr6 (132-187)||(14957259-14957314)
chr6 (132-188)||(14953594-14953650)
[»] scaffold1774 (1 HSPs)
scaffold1774 (132-188)||(1156-1212)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 25589633 - 25590045
Alignment:
Q  1 aaacttagatactaatggttaaatgtctttgagtgagatttttaggtcgagaaaca------aaacacattggtagtgaaatttcagtagaggaatgatc 94  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  25589633 aaacttagagactaatggttaaatgtctttgagtgagatttttaggtcgagaaacatatttcaaacacattggtagtgaaatttcagtagaggaatgatc 25589732  T
Q  95 aaagctttctactaggagagtctttaaaagaataaatatttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagactttatccta 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25589733 aaagctttctactaggagagtctttaaaagaataaatatttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaagcaagactttatccta 25589832  T
Q  195 tgtggattttaaatgatttgaaaaatgagtagaaattaagaattgtactttttgtctccaagcaacacattgtagttttcctctttcttggttgtttgag 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  25589833 tgtggattttaaatgacttgaaaaatgagtagaaattaagaattgtactttttgtccccaagcaacacattgtagtttccctctttcttggttgtttgag 25589932  T
Q  295 cttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaattcttcaatcttcatagtttt 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589933 cttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaattcttcaatcttcatagtttt 25590032  T
Q  395 aacatcctttgct 407  Q
    |||||||||||||    
T  25590033 aacatcctttgct 25590045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 50780345 - 50780478
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    |||||||||||||||||||| | ||| ||| |||||  ||| |||||||||||| ||||||||||||||  | |||||||||||| |  ||||| |||||    
T  50780345 cctctttcttggttgtttgaacctgaagagcttgttcaactgatctttctgaacttctatcaatcaccaacagttcatgtgcttcaagagaactctgcaa 50780444  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||||||||||||| || | ||||||||||    
T  50780445 ttcttcaatcttcatagtcttcaaatcctttgct 50780478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 44540449 - 44540582
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    |||||||||||||||||||| | ||| ||| ||| |  ||| |||||||||| | ||||||||||||||  | |||||||||||| |  ||||| |||||    
T  44540449 cctctttcttggttgtttgaacctgaagagcttgctaaactgatctttctgatcttctatcaatcaccaacagttcatgtgcttcaagagaactctgcaa 44540548  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||| ||||||||| || ||||||||||||    
T  44540549 ttcttcaaccttcatagtcttcacatcctttgct 44540582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 36617885 - 36617847
Alignment:
Q  367 tttgcaattcttcaatcttcatagttttaacatcctttg 405  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  36617885 tttgcaattcttcaatcttcatagttttcacatcctttg 36617847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 6668365 - 6668419
Alignment:
Q  118 ttaaaagaataaatatttatgtgagtgtgcccaaactttttgcatttgagtttgt 172  Q
    |||||| |||||  |||| ||| ||||||||||||||||||||||||| ||||||    
T  6668365 ttaaaaaaataagcatttgtgtaagtgtgcccaaactttttgcatttgggtttgt 6668419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 25724468 - 25724540
Alignment:
Q  116 ctttaaaagaataaatatttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagacttt 188  Q
    |||||||| |||||  |||| |||||||||||| |||||||||| ||||| ||||| | | || |||||||||    
T  25724468 ctttaaaaaaataagcatttgtgtgagtgtgccaaaactttttgtatttgggtttgacactaaccaagacttt 25724540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 6680787 - 6680920
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    ||||||||||| |||||||||||||| | | |||||| |||||||||| || ||||||||||||||||| || |||||||||||| | ||||||||||||    
T  6680787 cctctttcttgattgtttgagcttgaagggcttgttgaactaatctttttggacctctatcaatcaccaatagttcatgtgcttcaagggaactttgcaa 6680886  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||||||||||||| || ||||||||||||    
T  6680887 ttcttcaatcttcatagtcttcacatcctttgct 6680920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 407
Target Start/End: Complemental strand, 25171258 - 25171115
Alignment:
Q  264 ttgtagttttcctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaagg 363  Q
    ||||| ||| ||| |||||||||||||||||| ||| ||| |||||| | | || |||||||||||||||||||||||||||  |||||| ||||   ||    
T  25171258 ttgtaatttccctttttcttggttgtttgagcctgaagagcttgttgaaatgatatttctgaacctctatcaatcaccagtagctcatgtccttcagggg 25171159  T
Q  364 aactttgcaattcttcaatcttcatagttttaacatcctttgct 407  Q
    |||| |||||||||||||||||||||||||| ||||||||||||    
T  25171158 aactctgcaattcttcaatcttcatagttttcacatcctttgct 25171115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 407
Target Start/End: Original strand, 5724939 - 5725064
Alignment:
Q  282 ttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaattcttcaa 381  Q
    |||||||||||| | ||| ||| ||| || |||||||||||||||| |||||||||||||| || |||||||||||| |  ||||| |||||||||||||    
T  5724939 ttggttgtttgaacatgaagagcttgctgaactaatctttctgaacttctatcaatcaccaatagttcatgtgcttcaagagaactctgcaattcttcaa 5725038  T
Q  382 tcttcatagttttaacatcctttgct 407  Q
     |||| |||| || ||||||||||||    
T  5725039 ccttcgtagtcttcacatcctttgct 5725064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 407
Target Start/End: Complemental strand, 50912972 - 50912839
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    ||||||||||| |||||||||| ||| | | ||||||  || |||| || |||| |||||||||||||| || |||||||||||| |  ||||| ||||     
T  50912972 cctctttcttgattgtttgagcctgaagggcttgttggtctgatctctcagaacttctatcaatcaccaatagttcatgtgcttcaagagaactctgcag 50912873  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||||||||||||| || ||||||||||||    
T  50912872 ttcttcaatcttcatagtcttcacatcctttgct 50912839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 20290529 - 20290481
Alignment:
Q  357 tccaaggaactttgcaattcttcaatcttcatagttttaacatcctttg 405  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  20290529 tccaaggaacttttcaattcttcaatcttcaaagttttcacatcctttg 20290481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 31355718 - 31355658
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttg 405  Q
    ||||||||||||||||| ||||| |||||||||||||||||||  || || ||||||||||    
T  31355718 aattcatgtgcttccaatgaactctgcaattcttcaatcttcaatgtcttcacatcctttg 31355658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 53977896 - 53977836
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttg 405  Q
    |||||||| | |||||| ||||||||||||||||||||||||| | |||| ||||||||||    
T  53977896 aattcatgagtttccaatgaactttgcaattcttcaatcttcaaatttttcacatcctttg 53977836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 27187178 - 27187118
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttg 405  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||  || || ||||||||||    
T  27187178 aattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 27187118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 10383550 - 10383601
Alignment:
Q  137 tgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagacttt 188  Q
    ||||||||||||||||||||||||||||  |||||| || || |||||||||    
T  10383550 tgtgagtgtgcccaaactttttgcattttggtttgttcctaagcaagacttt 10383601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 48480197 - 48480155
Alignment:
Q  132 atttatgtgagtgtgcccaaactttttgcatttgagtttgtcc 174  Q
    ||||||||||||||||| | |||||||||||||| ||||||||    
T  48480197 atttatgtgagtgtgcctatactttttgcatttgggtttgtcc 48480155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 32108246 - 32108190
Alignment:
Q  132 atttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagacttt 188  Q
    |||| |||||||||| ||||||||||| |||||| || |||||| || |||||||||    
T  32108246 atttgtgtgagtgtgtccaaactttttacatttgggtctgtccctaagcaagacttt 32108190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 404
Target Start/End: Complemental strand, 8266893 - 8266764
Alignment:
Q  275 ctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaat 374  Q
    |||||||||| |||||||||||||| | | |||||| ||| ||||||||||||||||||||||||||||||  ||||||||||  | |||| | ||||||    
T  8266893 ctctttcttgattgtttgagcttgaagggcttgttgaactgatctttctgaacctctatcaatcaccagtagctcatgtgctttaagggaagtctgcaat 8266794  T
Q  375 tcttcaatcttcatagttttaacatccttt 404  Q
    |||| ||||||||||||||| |||||||||    
T  8266793 tctttaatcttcatagttttcacatccttt 8266764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 407
Target Start/End: Complemental strand, 295309 - 295172
Alignment:
Q  270 ttttcctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaacttt 369  Q
    |||||||||||||||||||||||| ||||| | | |||||| ||| |||| | ||||  |||||||||||||| || |||||||||||| |  ||||| |    
T  295309 ttttcctctttcttggttgtttgaacttgaagggcttgttgaactgatctctatgaaattctatcaatcaccaatagttcatgtgcttcaagagaactct 295210  T
Q  370 gcaattcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||||||| ||||||||| || ||||||||||||    
T  295209 gcaattcttcaaccttcatagtcttcacatcctttgct 295172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 407
Target Start/End: Complemental strand, 35895270 - 35895137
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    |||||||||||||||||||| | ||| ||| ||| || |||||||||| ||||| ||||||| ||| ||  | |||||||||||| |  ||||| |||||    
T  35895270 cctctttcttggttgtttgaacctgaagagcttgctgaactaatctttttgaacttctatcagtcagcaacagttcatgtgcttcaagagaactctgcaa 35895171  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||| ||||||||| || | ||||||||||    
T  35895170 ttcttcaaccttcatagtcttcaaatcctttgct 35895137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 404
Target Start/End: Complemental strand, 43088164 - 43088034
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    |||||||||||||||||||| | ||| ||| |||||| ||| |||||||||||| ||||||||||||||  | |||||||||||| |  ||||   ||||    
T  43088164 cctctttcttggttgtttgaacctgaagagcttgttgaactgatctttctgaacttctatcaatcaccaacagttcatgtgcttcaagagaaccccgcaa 43088065  T
Q  374 ttcttcaatcttcatagttttaacatccttt 404  Q
    |||||||| | ||||| | || |||||||||    
T  43088064 ttcttcaaccatcataatcttcacatccttt 43088034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 403
Target Start/End: Original strand, 22663890 - 22664017
Alignment:
Q  276 tctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaatt 375  Q
    |||||||| ||| ||||| ||||| ||| ||| || ||| || ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22663890 tctttcttagttttttgaacttgaagagcttgctgcactgatatttctaatcctctatcaatcaccattaattcatgtgcttccaaggaactttgcaatt 22663989  T
Q  376 cttcaatcttcatagttttaacatcctt 403  Q
    | ||||| ||||||||||| ||||||||    
T  22663990 cctcaattttcatagttttcacatcctt 22664017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 10275576 - 10275516
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttg 405  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||  || || ||||||||||    
T  10275576 aattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 10275516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 407
Target Start/End: Original strand, 37185883 - 37186011
Alignment:
Q  278 tttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaattct 377  Q
    |||||||||||||||| | ||| ||||||| || ||| |||||||||||| ||||||||||||||| | |||||||||||| |  ||||| |||||||||    
T  37185883 tttcttggttgtttgaacctgaagagtttgctgaactgatctttctgaacttctatcaatcaccag-agttcatgtgcttcaagagaactctgcaattct 37185981  T
Q  378 tcaatcttcatagttttaacatcctttgct 407  Q
    |||| ||||||||| || ||||||||||||    
T  37185982 tcaaccttcatagtcttcacatcctttgct 37186011  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 37790187 - 37790320
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    |||||||||||||||||||| | ||| ||| ||| || ||| |||||||||||| |||||||||||| |  | |||||||||||| |  ||||| |||||    
T  37790187 cctctttcttggttgtttgaacctgaagagcttgctgaactgatctttctgaacttctatcaatcactaacagttcatgtgcttcaagagaactctgcaa 37790286  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||| || |||||| || ||||||||||||    
T  37790287 ttcttcaacctgcatagtcttcacatcctttgct 37790320  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 1287866 - 1287806
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttg 405  Q
    |||||||||||||| || ||||| |||||||| ||||||||||  || || ||||||||||    
T  1287866 aattcatgtgcttctaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 1287806  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 407
Target Start/End: Complemental strand, 296734 - 296601
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    |||||||||||||||||||| | ||| |||  || || ||| |||||||||||| ||||||||||||||  |||||||||||||| |  ||||| |||||    
T  296734 cctctttcttggttgtttgaacctgaagagcatgctgaactgatctttctgaacttctatcaatcaccaacaattcatgtgcttcaagagaactctgcaa 296635  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||| ||||||||| || ||||||||||||    
T  296634 ttcttcaaccttcatagtcttcacatcctttgct 296601  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 407
Target Start/End: Complemental strand, 29961383 - 29961250
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    |||||||||||||||||||| | | | ||| |||||| ||| |||||||||||| ||||||||||||||  | |||||||||||| |  ||||| |||||    
T  29961383 cctctttcttggttgtttgaacctaaagagcttgttgaactgatctttctgaacttctatcaatcaccaacagttcatgtgcttcaagagaactctgcaa 29961284  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||| ||||||||| || ||||||||||||    
T  29961283 ttcttcaaccttcatagtcttcacatcctttgct 29961250  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 42560478 - 42560405
Alignment:
Q  115 tctttaaaagaataaatatttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagacttt 188  Q
    ||||| ||| |||||  |||| |||||||||||||||||||||||||| || ||||||||| || |||||||||    
T  42560478 tcttttaaaaaataagcatttgtgtgagtgtgcccaaactttttgcatctgggtttgtccctaagcaagacttt 42560405  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 39791412 - 39791349
Alignment:
Q  125 aataaatatttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagacttt 188  Q
    ||||| ||||| || ||||||||||||||||||| |||||| | ||||||| || |||||||||    
T  39791412 aataagtatttgtgcgagtgtgcccaaactttttacatttgggcttgtccctaagcaagacttt 39791349  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 13270146 - 13270188
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttca 387  Q
    |||||||||||||| || ||||| |||||||||||||||||||    
T  13270146 aattcatgtgcttctaatgaactctgcaattcttcaatcttca 13270188  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 14392356 - 14392302
Alignment:
Q  134 ttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagacttt 188  Q
    ||||||||||||||||||||||||| |||||  ||||||||| || ||| |||||    
T  14392356 ttatgtgagtgtgcccaaactttttacatttaggtttgtccctaagcaaaacttt 14392302  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 17256319 - 17256261
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctt 403  Q
    |||||||| |||||||  ||||||||||||||| |||||||||  ||||| ||||||||    
T  17256319 aattcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatcctt 17256261  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 407
Target Start/End: Original strand, 18648709 - 18648834
Alignment:
Q  282 ttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaattcttcaa 381  Q
    |||||||||||| | ||| ||| ||| || |||||||||||||||| |||||||||||||| || |||||||||||| |  ||||| |||||||||||||    
T  18648709 ttggttgtttgaacatgaagagcttgctgaactaatctttctgaacttctatcaatcaccaatagttcatgtgcttcaagagaactctgcaattcttcaa 18648808  T
Q  382 tcttcatagttttaacatcctttgct 407  Q
     |||| |||| || ||||||||||||    
T  18648809 ccttcgtagtcttcacatcctttgct 18648834  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 11747906 - 11748039
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    |||||||||||||||||||| | ||| ||| ||| ||  || |||||||||||| ||||||||||| ||  | |||||||||||| |  ||||| |||||    
T  11747906 cctctttcttggttgtttgaacctgaagagcttgctgatctgatctttctgaacttctatcaatcaacaacagttcatgtgcttcaagagaactctgcaa 11748005  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||| ||||||||| || | ||||||||||    
T  11748006 ttcttcaaccttcatagtcttcaaatcctttgct 11748039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 9698620 - 9698560
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttg 405  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||  || || ||||||||||    
T  9698620 aattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 9698560  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 22930925 - 22930967
Alignment:
Q  345 aattcatgtgcttccaaggaactttgcaattcttcaatcttca 387  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||    
T  22930925 aattcatgtgcctccaaagaactatgcaattcttcaatcttca 22930967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 407
Target Start/End: Complemental strand, 522 - 389
Alignment:
Q  274 cctctttcttggttgtttgagcttgaggagtttgttgtactaatctttctgaacctctatcaatcaccagtaattcatgtgcttccaaggaactttgcaa 373  Q
    ||||||||||| |||||||||| ||| | | ||||||  || |||| || |||| |||||||||||||| || |||||||||||| |  ||||| ||||     
T  522 cctctttcttgattgtttgagcctgaagggcttgttggtctgatctctcagaacttctatcaatcaccaatagttcatgtgcttcaagagaactctgcag 423  T
Q  374 ttcttcaatcttcatagttttaacatcctttgct 407  Q
    |||||||||||||||||| || ||||||||||||    
T  422 ttcttcaatcttcatagtcttcacatcctttgct 389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 14957314 - 14957259
Alignment:
Q  132 atttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagactt 187  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  14957314 atttgtgtgagtgtgcccaaactttttgcatttgggtttgtccctaagcaagactt 14957259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 14953650 - 14953594
Alignment:
Q  132 atttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagacttt 188  Q
    |||| |||||||||| ||||| |||||||||||| ||||||||| || |||||||||    
T  14953650 atttgtgtgagtgtgtccaaaatttttgcatttgggtttgtccctaagcaagacttt 14953594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1774 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1774
Description:

Target: scaffold1774; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 1156 - 1212
Alignment:
Q  132 atttatgtgagtgtgcccaaactttttgcatttgagtttgtccccaaacaagacttt 188  Q
    |||| |||||||||| ||||| |||||||||||| ||||||||| || |||||||||    
T  1156 atttgtgtgagtgtgtccaaaatttttgcatttgggtttgtccctaagcaagacttt 1212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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