View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_23 (Length: 407)
Name: NF15491_low_23
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 171 - 351
Target Start/End: Complemental strand, 6163569 - 6163389
Alignment:
| Q |
171 |
tcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacattat |
270 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6163569 |
tcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacggaaaagtatataaaagtgacacattat |
6163470 |
T |
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| Q |
271 |
tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaact |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6163469 |
tacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttaatggaact |
6163389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 166 - 352
Target Start/End: Original strand, 28158708 - 28158896
Alignment:
| Q |
166 |
agaattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaa--agtgac |
263 |
Q |
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| T |
28158708 |
agaattcaatatgaacttgcagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaattaacggaaaagtatataaattagtgac |
28158807 |
T |
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| Q |
264 |
acattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaactc |
352 |
Q |
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| T |
28158808 |
acattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatggaactc |
28158896 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 168 - 352
Target Start/End: Complemental strand, 14359609 - 14359425
Alignment:
| Q |
168 |
aattcaatatgaacttggagaagaagctgatttgtgatagagaaatttgtataggctattaaacttaaaactaacgaaaaagtatataaaagtgacacat |
267 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| || |
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| T |
14359609 |
aattcaatatgaacttgcagaagaagctcatttgtgatagagaaatttgtataggctattaaacttgaaactaacggaaaagtatataaaagtgacaaat |
14359510 |
T |
|
| Q |
268 |
tattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatggaactc |
352 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14359509 |
tattacaattcaggatagaactcataagtgacattagtctctcttttttacaagtgacacattatcacaattcttgatggaactc |
14359425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 55692095 - 55692203
Alignment:
| Q |
52 |
gtgatatgaaagatgtattttgtccatgaaacaatgtgaagagaagaagtgaggtggcacattgtagggatggaagtggccctactagcacgattgcaag |
151 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55692095 |
gtgatatgaaagatgtattttgtccatgaaacaatgagaagagaagaagtgaggtggcacattgtagggatggaagtgtccctactagcacgattgcaag |
55692194 |
T |
|
| Q |
152 |
acgtggaaa |
160 |
Q |
| |
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||||||||| |
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| T |
55692195 |
acgtggaaa |
55692203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 249 - 352
Target Start/End: Complemental strand, 4840069 - 4839966
Alignment:
| Q |
249 |
gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatcttttttacaagtgacacattatcacaattcttgatgga |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4840069 |
gtatataaaagtgacacattattacaattcatgatagaactcataagtgacattagtctatctttttttcaagtgacacattatcacaattcttgatgga |
4839970 |
T |
|
| Q |
349 |
actc |
352 |
Q |
| |
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|||| |
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|
| T |
4839969 |
actc |
4839966 |
T |
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