View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15491_low_24 (Length: 402)

Name: NF15491_low_24
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15491_low_24
NF15491_low_24
[»] chr1 (3 HSPs)
chr1 (331-390)||(15594464-15594523)
chr1 (26-96)||(16007252-16007322)
chr1 (355-387)||(29465281-29465313)
[»] chr7 (7 HSPs)
chr7 (345-386)||(8586400-8586441)
chr7 (355-390)||(13334072-13334107)
chr7 (352-386)||(3146697-3146731)
chr7 (352-390)||(8653873-8653911)
chr7 (355-390)||(10495078-10495113)
chr7 (352-386)||(8646310-8646344)
chr7 (353-386)||(8616148-8616181)
[»] chr8 (1 HSPs)
chr8 (352-386)||(43744249-43744283)
[»] chr4 (1 HSPs)
chr4 (352-390)||(9336595-9336633)
[»] chr2 (2 HSPs)
chr2 (352-390)||(16658221-16658259)
chr2 (353-390)||(14702837-14702874)
[»] chr3 (1 HSPs)
chr3 (353-390)||(53416761-53416798)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 390
Target Start/End: Complemental strand, 15594523 - 15594464
Alignment:
Q  331 caagccaatgtgaaaattcaggtttatgagggtgagagagcaagagctagtgacaataat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594523 caagccaatgtgaaaattcaggtttatgagggtgagagagcaagagctagtgacaataat 15594464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 16007252 - 16007322
Alignment:
Q  26 ccatttatgacagcaaggccggtgcctcatcaaacgagcttctacacaaagtctaaatttagattcagatg 96  Q
    |||||||||||||||||| | ||| |||||||||| ||  ||| ||||||||||| |||||||||||||||    
T  16007252 ccatttatgacagcaaggtcagtgtctcatcaaacaagtctcttcacaaagtctacatttagattcagatg 16007322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 355 - 387
Target Start/End: Complemental strand, 29465313 - 29465281
Alignment:
Q  355 tatgagggtgagagagcaagagctagtgacaat 387  Q
    |||||||||||||||||||||||||||||||||    
T  29465313 tatgagggtgagagagcaagagctagtgacaat 29465281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 8586400 - 8586441
Alignment:
Q  345 aattcaggtttatgagggtgagagagcaagagctagtgacaa 386  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  8586400 aattaaggtttatgagggtgagagagcaagagctagtgacaa 8586441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 13334072 - 13334107
Alignment:
Q  355 tatgagggtgagagagcaagagctagtgacaataat 390  Q
    ||||||||||||||||||||||||||||||||||||    
T  13334072 tatgagggtgagagagcaagagctagtgacaataat 13334107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 352 - 386
Target Start/End: Complemental strand, 3146731 - 3146697
Alignment:
Q  352 gtttatgagggtgagagagcaagagctagtgacaa 386  Q
    |||||||||||||||||||||||||||||||||||    
T  3146731 gtttatgagggtgagagagcaagagctagtgacaa 3146697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 8653911 - 8653873
Alignment:
Q  352 gtttatgagggtgagagagcaagagctagtgacaataat 390  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  8653911 gtttatgagggtgagagaccaagagctagtgacaataat 8653873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 10495078 - 10495113
Alignment:
Q  355 tatgagggtgagagagcaagagctagtgacaataat 390  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10495078 tatgagggtgagagagcaagagctagtgagaataat 10495113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 386
Target Start/End: Complemental strand, 8646344 - 8646310
Alignment:
Q  352 gtttatgagggtgagagagcaagagctagtgacaa 386  Q
    |||||||||||||||||||||||||| ||||||||    
T  8646344 gtttatgagggtgagagagcaagagcaagtgacaa 8646310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 386
Target Start/End: Complemental strand, 8616181 - 8616148
Alignment:
Q  353 tttatgagggtgagagagcaagagctagtgacaa 386  Q
    ||||||||||||||||| ||||||||||||||||    
T  8616181 tttatgagggtgagagatcaagagctagtgacaa 8616148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 386
Target Start/End: Complemental strand, 43744283 - 43744249
Alignment:
Q  352 gtttatgagggtgagagagcaagagctagtgacaa 386  Q
    |||||||||||||||||||||||||| ||||||||    
T  43744283 gtttatgagggtgagagagcaagagcaagtgacaa 43744249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 9336595 - 9336633
Alignment:
Q  352 gtttatgagggtgagagagcaagagctagtgacaataat 390  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  9336595 gtttatgagggtgagagaccaagagctactgacaataat 9336633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 16658221 - 16658259
Alignment:
Q  352 gtttatgagggtgagagagcaagagctagtgacaataat 390  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  16658221 gtttatgagggtgagagagcaagagctgctgacaataat 16658259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 14702874 - 14702837
Alignment:
Q  353 tttatgagggtgagagagcaagagctagtgacaataat 390  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  14702874 tttatgagggtgagagaacaagagccagtgacaataat 14702837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 53416761 - 53416798
Alignment:
Q  353 tttatgagggtgagagagcaagagctagtgacaataat 390  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  53416761 tttatgagggtgagagaccaagagctactgacaataat 53416798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University