View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_27 (Length: 396)
Name: NF15491_low_27
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 29071361 - 29071175
Alignment:
| Q |
1 |
cgacaacaatttttctattgcaaattttaacgtaagtgaggtgaccataatatttgacataagaaagtaaataaatttgatatatgactcatatttaagg |
100 |
Q |
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| T |
29071361 |
cgacaacaatttttctattgcaaattttaacgtaagtgaggtgaccataatatttgacataagaaagtaaataaatttgatatatgactcatatttaagg |
29071262 |
T |
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| Q |
101 |
ttttagctcctctggtgatttttaaaggagaaaactcaaacttttaaatgataatccattctttttaaattattttatcgatctact |
187 |
Q |
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| T |
29071261 |
ttttagctcctctggtgatttttaaaggagaaaattcaaacttttaaatgataatccattctttttaaattattttatctatctact |
29071175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 242 - 380
Target Start/End: Complemental strand, 29071120 - 29070981
Alignment:
| Q |
242 |
catcatgagctagtagaactactctgtcannnnnnnnn--ccttccaactaaataagtaggtagggttttttcctcttgtgtttacgtaataatgtataa |
339 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29071120 |
catcatgagctagtagaactactctgtcatttttttttttccttccaactaaataagtaggtagggttttt-cctcttgtgtttacgtaataatgtataa |
29071022 |
T |
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| Q |
340 |
aattcacttcatttatttcttgtatatgttatatcttcttt |
380 |
Q |
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| T |
29071021 |
aattcacttcatttatttcttgtatatgttatatcttcttt |
29070981 |
T |
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