View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_28 (Length: 389)
Name: NF15491_low_28
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 43101191 - 43101553
Alignment:
| Q |
14 |
aaatgaatgtatgaatgaaagataagagtataataggttgcgtcgctaaccctttttacatgataaaatcaattatggtaaacataacataaataaattt |
113 |
Q |
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| T |
43101191 |
aaatgaatgtatgaatgaaagataagagtataacaggttgcgtcgctaaccttttttacatgataaaatcaattctgataaacataacataaataaattt |
43101290 |
T |
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| Q |
114 |
aggagacaaaacattgatatgcatgactatttgaattcgttgtagaatatcaataacttctaatactaagaagccaaaattatataacgaaatggtataa |
213 |
Q |
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| T |
43101291 |
aagagacaaaacattgatatgcatgactatttgaacttgttgtagaagatcaataacctctaatactaagaagccaaaactatataacgaaatggtataa |
43101390 |
T |
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| Q |
214 |
aaacttgattatccgaacacgctcgctaaagttaacaatataagaaacatatcatattaaaaatattttacacaataattcatagattcggataactata |
313 |
Q |
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| T |
43101391 |
aaacttgattatccgaacacgctcgctaaagttaacaatataagaaacatatcatattaaaaatattttacacaataattcatagattcggataactata |
43101490 |
T |
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| Q |
314 |
gccttttatcatacannnnnnnnagggatatcatattacaatattaattggcatggtataatt |
376 |
Q |
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| T |
43101491 |
gccttttatcatacattttttttagggatatcatattacaatattaattggcatggtataatt |
43101553 |
T |
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