View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_29 (Length: 376)
Name: NF15491_low_29
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 44646882 - 44647235
Alignment:
| Q |
1 |
tagcacagtttactatatccatgaatatatatgacaaaacttaaatcaatgatgttgatttatcaccagaaacatgaattgaatgttctcaattctgctt |
100 |
Q |
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| T |
44646882 |
tagcacagtttactatatccatgaatatatatgacaaaacttaaatcaatgatgttgatttatcaccagaaacatgaattgaatgttctcaattctgctt |
44646981 |
T |
|
| Q |
101 |
cagcaagcttttaagtatatcatggatagtgaattatttcatcgcatgttccagagaactcaaaagcaatttggttggtttctaagattatgcagaagtt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44646982 |
cagcaagcttttaaatatatcatggatagtgaattatttcatcgcatgttccagagaactcaaaagaaatttggttggtttctaagattatgcagaagtt |
44647081 |
T |
|
| Q |
201 |
ttcttcttatcatcaagctatcctttatgtattcagttaaacttacttgacaggccatagtgtcttttaagggctaatatatagtgggccggctatgaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44647082 |
ttcttcttatcatcaagctatcctttatgtattcagttaaacttacttgacaggccatagtgtcttttaagggctaatatatagtgggccggctatgaca |
44647181 |
T |
|
| Q |
301 |
ccttaagttatctgcataagcttcgatatttaatttgggacgtttatgacactaatct |
358 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |
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| T |
44647182 |
ccttaagttatctgcacaagcttcgatat----tttgggacgtctatgacactaatct |
44647235 |
T |
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