View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_3 (Length: 630)
Name: NF15491_low_3
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 21 - 621
Target Start/End: Complemental strand, 11873424 - 11872824
Alignment:
| Q |
21 |
ggtccaaggtgtttacattctggaaaaggatcggcaagaacaacgagaaggtcccaatgctctagcacttccttggtggacattcttccattttcagctg |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11873424 |
ggtccaaggtgtttacattctggaaaaggatcggcaagaacaacgagaaggtcccaatgctctagcacttccttggtggacattcttccattttcagctg |
11873325 |
T |
|
| Q |
121 |
catcatacactaattgatgatgttgatcactccatatttggtgcaatttatgagttcaagcctccatcatcaatttgcaatgacaccttacacagaagtc |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11873324 |
catcatacactaattgatgatgttgatcactccatatttggtgcaatttatgagttcaagcctccatcatcaatttgcaatgacaccttacatagaagtc |
11873225 |
T |
|
| Q |
221 |
cgcgttatgtaattgcctttcgagggactataaaagaaccagacacatttatacgcgatttccatttggattttgaatattgtagaaatggacttcatcg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11873224 |
cgcgttatgtaattgcctttcgagggactataaaagaaccagacacattaatacgcgatttccatttggattttgaatattgtagaaatggacttcatcg |
11873125 |
T |
|
| Q |
321 |
aacttcacgaccaaaaatagccatcgaagctgtcagaaacatggtggatattgtaggtggttcgaaaatatggttggctggccactccctaggttcagga |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11873124 |
aacttcacgaccaaaaatagccatcgaagctgtcagaaacatggtggatattgtaggtggttcgaaaatatggttggctggccactccctaggttcagga |
11873025 |
T |
|
| Q |
421 |
attgcattgcttggaggaaaagctatggctaagaaggacatattcatcgagtcttttcttttcaaccctccatttccatctgctccaattgnnnnnnnnn |
520 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11873024 |
attgcattgcttggaggaaaagctatggctaagaaggacatattcattgagtcttttcttttcaaccctccatttccatctgctccaattgaaagaatta |
11872925 |
T |
|
| Q |
521 |
nnnnnnnnnngtggaaagaaaggcttcgaatcgctggcagcatgttcacagctggactcgcggttgctacaatggatatcaaaaaattgtcctttgcttc |
620 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11872924 |
aaaataaaaagtggaaagaaaggcttcgagtcgctggcagcatgttcacagctggactcgcggttgctacaatggatatcaaaaaattgtcctttgattc |
11872825 |
T |
|
| Q |
621 |
t |
621 |
Q |
| |
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| |
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|
| T |
11872824 |
t |
11872824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 38 - 511
Target Start/End: Complemental strand, 2115840 - 2115361
Alignment:
| Q |
38 |
ttctggaaaaggatcggcaagaacaacgagaaggtcccaatgctctagcacttccttggtggacattcttccattttcagctgcatcatacactaattga |
137 |
Q |
| |
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|||| ||||| || || ||||||||||| |||||||| || || ||||| ||||||| ||| ||||||| || |||||||||| |||||||||| |||| |
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| T |
2115840 |
ttctagaaaaagaccgacaagaacaacggaaaggtcccgattctatagcatttccttg-tgggcattctttcactttcagctgcttcatacactagttga |
2115742 |
T |
|
| Q |
138 |
tgatgttgatcactccatatttggtgcaatttatgagttcaagcctcca-tcatcaatttgcaatgacaccttacacagaagtccgcgttatgtaattgc |
236 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||| | | || |||||| |||||||||| |||||||| ||||||||||||| |
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| T |
2115741 |
tgatgttgataactccatatttggtgcaatttatgaattcaagcctccacccgtatatgtgcaataacaccttacatagaagtccatgttatgtaattgc |
2115642 |
T |
|
| Q |
237 |
ctttcgagggactataaaagaaccagacacatttatacgcgatttccatttggattttgaatattgtagaaatggacttcatcgaacttcacgaccaaaa |
336 |
Q |
| |
|
|||||||||||||||| || ||||| || || ||| ||| | | |||||| | ||| | | |||||||||||||||||||||||| || | |
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| T |
2115641 |
atttcgagggactataaccaaagcagactcagtttcacgtgatattgagttggatctccaatttctcaaaaatggacttcatcgaacttcacgctcagag |
2115542 |
T |
|
| Q |
337 |
atagccatcgaagctgtcagaaacatggtggatattgtagg------tggttcgaaaatatggttggctggccactccctaggttcaggaattgcattgc |
430 |
Q |
| |
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||||| |||| |||||| |||||| |||||| || ||| | ||||||||| |||||||||||||| ||||| ||||| || || || ||||||| |
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| T |
2115541 |
atagctatcggagctgtgagaaacctggtggctagtgttagtggtaatggttcgaatatatggttggctggtcactctctaggatctggcatggcattgc |
2115442 |
T |
|
| Q |
431 |
ttggaggaaaagctatggctaagaaggacatattcatcgagtcttttcttttcaaccctccatttccatctgctccaattg |
511 |
Q |
| |
|
||| || ||| | ||||||| || | || ||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
2115441 |
ttgccgggaaaacattggctaaaaatggcacattcatcgagtcttttctttttaaccctccatttgcatctgctccaattg |
2115361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 42049941 - 42050165
Alignment:
| Q |
21 |
ggtccaaggtgtttacattctggaaaaggatcggcaagaacaacgagaaggtcccaatgctctagcacttccttggtggacattcttccattttcagctg |
120 |
Q |
| |
|
|||||||| |||||||||||| |||| ||| ||||||||| | || |||||| | ||||||| || | |||||||||||||| |||||||||||| || |
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| T |
42049941 |
ggtccaagctgtttacattctagaaagggaccggcaagaaaatcgtgaaggttcggatgctctcgcgccgccttggtggacatttttccattttcagttg |
42050040 |
T |
|
| Q |
121 |
catcatacactaattgatgatgttgatcactccatatttggtgcaatttatgagttcaagcctccatcatcaatttgcaatgacaccttacacagaagtc |
220 |
Q |
| |
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| || | |||| | |||||||||||| || || ||||||||||| |||||||||||||||||||||||| | ||||| || ||| | |||||| |
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| T |
42050041 |
cttcgtccacttgtagatgatgttgattcttcaatctttggtgcaatctatgagttcaagcctccatcatcacaatctaatgatactttatatcgaagtc |
42050140 |
T |
|
| Q |
221 |
cgcgttatgtaattgcctttcgagg |
245 |
Q |
| |
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| |||||||| |||||||||||||| |
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|
| T |
42050141 |
cacgttatgtgattgcctttcgagg |
42050165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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