View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15491_low_31 (Length: 364)
Name: NF15491_low_31
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 40678587 - 40678235
Alignment:
| Q |
1 |
attgccaattgtctcttcctatgacgccgccacgcagcttgtataaaagatgccccccaagctctccactgatgagagtagtatctgaaagcatgttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40678587 |
attgccaattgtctcttcctatgacgccgccacgcagcttgtataaaagatgccccccaagctctccactgatgagagtagtatctgaaagcatgttgca |
40678488 |
T |
|
| Q |
101 |
gtttcttgctatgaagacgcttaaactggcttgacacaaatttgagatcttctgctctaagcgcaaatgcttctacttcacttagtgtcttaacagttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40678487 |
gtttcttgctatgaagacgcttaaactggcttgacacaaatttgagatcttctgctctaagtgcaaatgcttctacttcacttagtgtcttaacagttct |
40678388 |
T |
|
| Q |
201 |
tgtagatgatggaaggtttagactagatgctggcattaaagcccatgttagtaattcttcaccacaaaaatcacctggttttagtgtgattgaattgaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40678387 |
tgtagatgatggaaggtttagactagatgctggcattaaagcccatgttagcaattcttcaccacaaaaatcacctggttttagtgtgattgaattgaag |
40678288 |
T |
|
| Q |
301 |
aatcctgatctaccaccatctgttgtagaactgtctatacttcctctgatgat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40678287 |
aatcctgatctaccaccatctgttgtagaactgtctatacttcctctgatgat |
40678235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 332
Target Start/End: Original strand, 13112226 - 13112495
Alignment:
| Q |
63 |
tctccactgatgagagtagtatctgaaagcatgttgcagtttcttgctatgaagacgcttaaactggcttgacacaaatttgagatcttctgctctaagc |
162 |
Q |
| |
|
|||||| ||||| || || ||||| |||||||| || ||||||||||| ||||||||||| ||||| || | ||||||||| ||||| || ||| ||| |
|
|
| T |
13112226 |
tctccattgatgtgaataatatctaaaagcatgctgaagtttcttgctgtgaagacgcttgaactgactcgccacaaattttagatcctccgcttgtagc |
13112325 |
T |
|
| Q |
163 |
gcaaatgcttctacttcacttagtgtcttaacagttcttgtagatgatggaaggtttagactagatgctggcattaaagcccatgttagtaattcttcac |
262 |
Q |
| |
|
||||| |||||||||||| | || | || || || | ||||| || || | || ||| | || ||| | ||| |||||||||| |||||||| | |
|
|
| T |
13112326 |
gcaaaagcttctacttcagtaagagcttttacggtacgagtagaggaaggtaaattgagagttgagtttggtaataatgcccatgttaacaattcttctc |
13112425 |
T |
|
| Q |
263 |
cacaaaaatcacctggttttagtgtgattgaattgaagaatcctgatctaccaccatctgttgtagaact |
332 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||||| | || || |||| |||||||||||| |
|
|
| T |
13112426 |
cacaaaagtctcctggccttagtgtgattgaattgaagaatccataccttcctccatttgttgtagaact |
13112495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University