View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_32 (Length: 362)
Name: NF15491_low_32
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 118 - 354
Target Start/End: Complemental strand, 14878691 - 14878448
Alignment:
| Q |
118 |
attttttgtattcatatcatcataacatttgttacaagttgtacnnnnnnn--tataacataattagaaataaaggaaaattaatactaatgaatatttg |
215 |
Q |
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| T |
14878691 |
attttttgtattcatatcatcataacatttgttacaagttgtacaaaaaaaaatataacataattagaaataaaggaaaattaatactaatgaatatttg |
14878592 |
T |
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| Q |
216 |
aaataggtccttaannnnnnnnnn----aaaagggtt-atatatttagaaacataggcggtggcaattttgtgcacgacacacaatacttgaatgataaa |
310 |
Q |
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| T |
14878591 |
aaataggtccttaagattttttttttttaaaagggtttatatatttagaaacataggcggtggcaattttgtgtacgacacacaatacttgaatgataaa |
14878492 |
T |
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| Q |
311 |
cgtccaatgaatctaatctatattcaatgcagtggatattcttc |
354 |
Q |
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| T |
14878491 |
cgtccaatgaatctaatctatattcaatgcactggattttcttc |
14878448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 14878819 - 14878706
Alignment:
| Q |
21 |
ttaaaattgtagagcactaagctataaccgttggaggcttgttgaggtgtctagtccttgttcaagagagagaattagttcacgtttcaatcatactatt |
120 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14878819 |
ttaaaattgtagagcagtaagctataaccgttggaggcttgttgaggtgtctagtccttgttcaagagagagaattagttcacgtttcaatcatactatt |
14878720 |
T |
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| Q |
121 |
ttttgtattcatat |
134 |
Q |
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| T |
14878719 |
ttttgtattcatat |
14878706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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