View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_34 (Length: 340)
Name: NF15491_low_34
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 27702414 - 27702117
Alignment:
| Q |
18 |
gttttaatatatcaaacttttctcaacnnnnnnntacactaagatgacacttttaatttggtgacacaac-------------------caaaatacaat |
98 |
Q |
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| T |
27702414 |
gttttaatatatcaaacttttctcaacaaaaaaatacactaagatgacacttttaatttggtgacacaactattacatcaatgctacctcaaaatacaat |
27702315 |
T |
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| Q |
99 |
ctattaggttatgaaaccattcatatgtattcataggacatttagtcaagaagtttagaatgtcataccaataataatcctttcgacctctttttgttcc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27702314 |
ctattaggttatgaaaccattcatatgtattcataggacatttagtcaagaagtttagaatgtcataccaataataatcctttcgacctctttttgttcc |
27702215 |
T |
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| Q |
199 |
ggaataactctaaacaagcttctagttgcaggaattcctcaacgaaaaggatggtaattactccaagcaactatagaatggcataccaaacactacac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
27702214 |
ggaataactctaaacaagcttctagttgcaggaattcctcaacgaaaaggatggtaattactccaagcaactttagaatgtcataccaaacactacac |
27702117 |
T |
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