View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15491_low_35 (Length: 339)

Name: NF15491_low_35
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15491_low_35
NF15491_low_35
[»] chr1 (3 HSPs)
chr1 (1-321)||(8534269-8534589)
chr1 (1-321)||(8599508-8599828)
chr1 (1-321)||(8613598-8613918)
[»] chr8 (1 HSPs)
chr8 (1-236)||(14751922-14752154)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 8534269 - 8534589
Alignment:
Q  1 accgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8534269 accgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgctc 8534368  T
Q  101 tgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaag 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8534369 tgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaag 8534468  T
Q  201 accgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcgctattaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8534469 accgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcgctattaga 8534568  T
Q  301 ttcttgtgggaagatactact 321  Q
    |||||||||||||||||||||    
T  8534569 ttcttgtgggaagatactact 8534589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 8599508 - 8599828
Alignment:
Q  1 accgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8599508 accgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgctc 8599607  T
Q  101 tgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaag 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8599608 tgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaag 8599707  T
Q  201 accgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcgctattaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8599708 accgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcgctattaga 8599807  T
Q  301 ttcttgtgggaagatactact 321  Q
    |||||||||||||||||||||    
T  8599808 ttcttgtgggaagatactact 8599828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 8613918 - 8613598
Alignment:
Q  1 accgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  8613918 accgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagtatagcaaccaatatcgggggcacaagaggtaagaaggttgctc 8613819  T
Q  101 tgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaag 200  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8613818 tgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaag 8613719  T
Q  201 accgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcgctattaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8613718 accgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcgctattaga 8613619  T
Q  301 ttcttgtgggaagatactact 321  Q
    |||||||||||||||||||||    
T  8613618 ttcttgtgggaagatactact 8613598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14751922 - 14752154
Alignment:
Q  1 accgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgctc 100  Q
    ||||||||||| |||||||| || || ||||||||||| ||||| || ||| | |||||||| || ||||| || |||||||| |||| ||| ||  ||     
T  14751922 accgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcgacgaatatgggtggcacaagcggtaggaacgtgactt 14752021  T
Q  101 tgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaag 200  Q
    |||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||| || |||||||| | ||  ||||||||   ||| ||||  || ||    
T  14752022 tgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacattgctag 14752118  T
Q  201 accgtatatatgaaacatcggaacagtacatatgaa 236  Q
    ||||||||| |||||||| ||||  || ||||||||    
T  14752119 accgtatatgtgaaacatgggaattgtgcatatgaa 14752154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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