View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_38 (Length: 320)
Name: NF15491_low_38
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 27581944 - 27581635
Alignment:
| Q |
9 |
agcataggtagattaaatataaaacattgaaagagttttggaactaatacttaatgctcgtttctcacattaagtatttgttctcagctgatacgttccg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |
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| T |
27581944 |
agcagaggtagattaaatataaaacattgaaagagttttggaactaatacttaatgctcgtttctcacattacatattagttctcgcctgatacgttccg |
27581845 |
T |
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| Q |
109 |
cagatatttataccaaccaaactctagggttagaaattttgaacattttacccaaactccgctgcatcactcaacatgcaatgagcaagtgaccttactg |
208 |
Q |
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| T |
27581844 |
cggatatttataccaaccaaactctagggttagaaattttgaacattttacccaaactccgctgcatcactcaacatgcaacgagcaagtgaccatactg |
27581745 |
T |
|
| Q |
209 |
gagtcttaatatttgctgtgccgatcaacaatagaatcattgatcgtgcatgttcagctatcaacgaattgtgcaaaataggacttgtagagaagaatgt |
308 |
Q |
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|||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27581744 |
gagtcttaatattttctacaccgatcaacaatagaatcattgattgtgcatgttcagctatcaacgaattgtgcaaaataggacttgtagagaataatgt |
27581645 |
T |
|
| Q |
309 |
atggcatcaa |
318 |
Q |
| |
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|||||||||| |
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| T |
27581644 |
atggcatcaa |
27581635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 66 - 318
Target Start/End: Original strand, 27582716 - 27582969
Alignment:
| Q |
66 |
tcgtttctcacattaagtatttgttctcagctgatacgttccgcagatatttataccaaccaaactctagggttagaaattttgaacattttacccaaac |
165 |
Q |
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|||||| |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
27582716 |
tcgtttttcacattaagtattagttctcacctgatacgtttcgcagatatttataccaaccaaactctagggttaggaattttgaacattctacccaaac |
27582815 |
T |
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| Q |
166 |
tccgctgcatcactcaacatgcaatgagcaagtgacctt--actggagtcttaatatttgctgtgccgatcaacaatagaatcattgatcgtgcatgttc |
263 |
Q |
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| T |
27582816 |
tccaccgcatcactcaacatgcaacgagcatgtgacctttccctggagtcttaatatttgctacgccgatcaacaataaaatcattgatcgtgcacgttc |
27582915 |
T |
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| Q |
264 |
agctatcaacgaattgtgcaaaataggacttgtagagaagaatgtatggcatcaa |
318 |
Q |
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|||||| | ||| |||||||||| | ||||| ||| | ||||||||||||||| |
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| T |
27582916 |
agctatgtaagaactgtgcaaaattgaacttgcaga-agaaatgtatggcatcaa |
27582969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 66 - 318
Target Start/End: Original strand, 27543393 - 27543645
Alignment:
| Q |
66 |
tcgtttctcacattaagtatttgttctcagctgatacgttccgcagatatttataccaaccaaactctagggttagaaattttgaacattttacccaaac |
165 |
Q |
| |
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|||||||| |||||||||||| |||| || || |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
27543393 |
tcgtttctaacattaagtattagttcacacctaatacgttccgtggatatttataccaaccaaactctagggttaggaattttaaacattctacccaaac |
27543492 |
T |
|
| Q |
166 |
tccgctgcatcactcaacatgcaatgagcaagtgaccttactggagtcttaatatttgctgtgccgatcaacaatagaatcattgatcgtgcatgttcag |
265 |
Q |
| |
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||||| ||||||||||||||||| |||||||| ||||| | |||||||||||||||||| ||| |||||||||| ||||||||||| |||| |||||| |
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| T |
27543493 |
tccgccacatcactcaacatgcaacgagcaagtaaccttcccggagtcttaatatttgctacgccaatcaacaataaaatcattgatcctgcacgttcag |
27543592 |
T |
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| Q |
266 |
ctatcaacgaattgtgcaaaataggacttgtagagaagaatgtatggcatcaa |
318 |
Q |
| |
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|||| || ||| |||||||||||||| ||| ||| || |||||||| |||||| |
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| T |
27543593 |
ctatgaaagaactgtgcaaaataggatttgcagaaaacaatgtatgacatcaa |
27543645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 65 - 295
Target Start/End: Original strand, 34992600 - 34992831
Alignment:
| Q |
65 |
ctcgtttctcacattaagtatttgttctcagctgatacgttccgc-agatatttataccaaccaaactctagggttagaaattttgaacattttacccaa |
163 |
Q |
| |
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||||||||||||||||||| || ||||||| || ||||| ||| | |||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |
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| T |
34992600 |
ctcgtttctcacattaagtgttagttctcaccttatacgctcccttaaatatttataccaacaaaactctagggttaggaattttgaacattctacccaa |
34992699 |
T |
|
| Q |
164 |
actccgctgcatcactcaacatgcaatgagcaagtgac---cttactggagtcttaatatttgctgtgccgatcaacaatagaatcattgatcgtgcatg |
260 |
Q |
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|||| || |||||||||||||||||| ||||||||||| ||| |||| |||| ||| | ||| ||||| ||||| || |||||||||| ||||| | |
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| T |
34992700 |
actctgccgcatcactcaacatgcaacgagcaagtgaccttctttctggggtctcaatgtatgc---gccgaacaacattaaaatcattgattgtgcacg |
34992796 |
T |
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| Q |
261 |
ttcagctatcaacgaattgtgcaaaataggacttg |
295 |
Q |
| |
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||||||||| |||||| ||||||| |||||||||| |
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| T |
34992797 |
ttcagctatgaacgaactgtgcaagataggacttg |
34992831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 129 - 318
Target Start/End: Original strand, 34984725 - 34984902
Alignment:
| Q |
129 |
actctagggttagaaattttgaacattttacccaaactccgctgcatcactcaacatgcaatgagcaagtgaccttactggagtcttaatatttgctgtg |
228 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||| ||| ||| |||||||||||| |||||||||||||| ||| ||||| ||||||| || | |
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| T |
34984725 |
actctagggttaggaattttgaacattctacccaaacatcgc---atccctcaacatgcaacgagcaagtgaccttcctgcagtctcaatatttattgcg |
34984821 |
T |
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| Q |
229 |
ccgatcaacaatagaatcattgatcgtgcatgttcagctatcaacgaattgtgcaaaataggacttgtagagaagaatgtatggcatcaa |
318 |
Q |
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| T |
34984822 |
---------aataaaatcattgatcgtgcacgttcagctatgaacgaactgtgcaaaataggaattgcagaaaacaatgtatggcatcaa |
34984902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 34980271 - 34980404
Alignment:
| Q |
133 |
tagggttagaaattttgaacattttacccaaactccgctgcatcactcaacatgcaatgagcaagtgaccttactggagtcttaatatttgctgtgccga |
232 |
Q |
| |
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|||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||| |||||||||| ||| |||||| ||||||||||| | || |
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| T |
34980271 |
tagggttatgaattttgaacattgtacccaaacaccgccgcatcactcaacatgcaacgagcaagtgagcttcctggag---caatatttgctgcactga |
34980367 |
T |
|
| Q |
233 |
tcaacaatagaatcattgatcgtgcatgttcagctat |
269 |
Q |
| |
|
| ||||||| |||||||||||||||| ||||| |||| |
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| T |
34980368 |
ttaacaataaaatcattgatcgtgcacgttcaactat |
34980404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 158 - 318
Target Start/End: Complemental strand, 27542906 - 27542746
Alignment:
| Q |
158 |
acccaaactccgctgcatcactcaacatgcaatgagcaagtgaccttactggagtcttaatatttgctgtgccgatcaacaatagaatcattgatcgtgc |
257 |
Q |
| |
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|||||||||||| |||||||||| |||||||| |||||||| || || |||||||| |||||| || |||||| || |||| ||||||||||| ||| |
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| T |
27542906 |
acccaaactccgatgcatcactcgacatgcaacgagcaagtaactttcttggagtctcgatattttctacgccgataaaaaataaaatcattgatcatgc |
27542807 |
T |
|
| Q |
258 |
atgttcagctatcaacgaattgtgcaaaataggacttgtagagaagaatgtatggcatcaa |
318 |
Q |
| |
|
| ||| || ||| |||||| | ||||||||| ||||| ||| || ||| ||||||||||| |
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|
| T |
27542806 |
acgtttagttatgaacgaactatgcaaaatatgacttccagaaaacaatttatggcatcaa |
27542746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 27543321 - 27543393
Alignment:
| Q |
14 |
aggtagattaaatataaaacattgaaagagttttggaactaatacttaatgctcgtttctcacattaagtatt |
86 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
27543321 |
aggtagattaaatataatttttttgaagagttttggaactaatacgtaatgatcgtttctcacattaagtatt |
27543393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 27582457 - 27582423
Alignment:
| Q |
49 |
gaactaatacttaatgctcgtttctcacattaagt |
83 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |
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|
| T |
27582457 |
gaactaatacttaatgcttgtttctcacattaagt |
27582423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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