View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_4 (Length: 610)
Name: NF15491_low_4
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 16 - 591
Target Start/End: Complemental strand, 39516659 - 39516084
Alignment:
| Q |
16 |
aatatttggcttcatgtggatgctgcttatgctggaagcgcttgtatatgtccagagtaccgccacttcattgatggggttgaagaagcagattcattta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39516659 |
aatatttggcttcatgtggatgctgcttatgctggaagcgcttgtatatgtccagagtaccgccacttcattgatggggttgaagaagcagattcattta |
39516560 |
T |
|
| Q |
116 |
acatgaatgcacataaatggttccttactaacttcgactgttcagtgctttgggtgaaggtatccataatttctttctaaatgccacttctgaaacttta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39516559 |
acatgaatgcacataaatggttccttactaacttcgactgttcagtgctttgggttaaggtatccataatttctttctaaatgtcacttctgaaacttta |
39516460 |
T |
|
| Q |
216 |
tttgtaacgtttcactttactttataaacaaaaatataagtaaagttgatatgtgttgatacagaacagaagtgctctgattcagtcgctgtctacaaat |
315 |
Q |
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| T |
39516459 |
tctgtaacgtttcactttactttataaacaaaaatataagtaaagttgatatgtgttgatacaggacagaagtgctctgattcagtcgctgtctacaaat |
39516360 |
T |
|
| Q |
316 |
ccataatttctgaaaaataaggtaggtttctattgcatgcttgtagcttgtattaaaattttgtgacagaagtgccattgttaatgtgaagtcttttttc |
415 |
Q |
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| T |
39516359 |
ccagaatttctgaaaaataaggtaggtttctattgcatgcttgtagcttgtattaaaattttgtgacagaagtgccattgttaatgtgaagtcttttttc |
39516260 |
T |
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| Q |
416 |
attggtatgttttacgggaaatcgtgattcttaggaatgtttataagaaattaagattcctaggaaaattaaattatccccctgacaaacatattctctt |
515 |
Q |
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| T |
39516259 |
attggtatgttttacgggaaatcgtgattcttaggaatgtttataagaaattaagattcctaggaaacttaaattatccccctgacaaacatattctctt |
39516160 |
T |
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| Q |
516 |
cctccgttttttcatggattcagtcttatactgagtaacagggtcatttggcttaagtttcttaaacaggaagcat |
591 |
Q |
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| T |
39516159 |
cctccgttttttcatggattcagtcttatactgagtaacagggtcatttggcttaagtttcttaaacaggaagcat |
39516084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 39529460 - 39529098
Alignment:
| Q |
19 |
atttggcttcatgtggatgctgcttatgctggaagcgcttgtatatgtccagagtaccgccacttcattgatggggttgaagaagcagattcatttaaca |
118 |
Q |
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| T |
39529460 |
atttggtttcatgtggatgctgcttatgctggaagtgcttgtatatgtccagagtaccgccacttcattgacggagttgaagaagcagattcatttaaca |
39529361 |
T |
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| Q |
119 |
tgaatgcacataaatggttccttactaacttcgactgttcagtgctttgggtgaaggtatccataatttctttctaaatgccacttctgaaactttattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | ||||||| | |||||| |||||| | ||| |
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| T |
39529360 |
tgaatgcacataaatggttccttactaacttcgactgttcagtgctttgggttaaggtacccataacataattctaaacgtcacttcagaaactgttttt |
39529261 |
T |
|
| Q |
219 |
gtaacgtttcactttactttataaacaaaa----atataagtaaagttgatatgtgttgatacagaacagaagtgctctgattcagtcgctgtctacaaa |
314 |
Q |
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||||| |||||||||||||||||||||| | ||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
39529260 |
gtaacatttcactttactttataaacaagaatgtatataagtaaaattgatacgtgttgatacaggacagaagtgctttgattcagtcgctgtctacaaa |
39529161 |
T |
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| Q |
315 |
tccataatttctgaaaaataaggtaggtttct-attgcatgcttgtagcttgtattaaaattt |
376 |
Q |
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||| ||| |||||||||||||||||| |||| || |||| |||||| ||||||| |||||| |
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| T |
39529160 |
tccggaatatctgaaaaataaggtaggcttctgtttacatgtttgtaggttgtattgaaattt |
39529098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 21198217 - 21198271
Alignment:
| Q |
19 |
atttggcttcatgtggatgctgcttatgctggaagcgcttgtatatgtccagagt |
73 |
Q |
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|||||| ||||| | ||||||||||||||||| || |||||||| |||||||||| |
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| T |
21198217 |
atttgggttcatattgatgctgcttatgctggcagtgcttgtatttgtccagagt |
21198271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 11004823 - 11004877
Alignment:
| Q |
19 |
atttggcttcatgtggatgctgcttatgctggaagcgcttgtatatgtccagagt |
73 |
Q |
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|||||| ||||||| ||||||||||||||||| || |||||||| |||||||||| |
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| T |
11004823 |
atttgggttcatgttgatgctgcttatgctggtagtgcttgtatttgtccagagt |
11004877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 11015151 - 11015205
Alignment:
| Q |
19 |
atttggcttcatgtggatgctgcttatgctggaagcgcttgtatatgtccagagt |
73 |
Q |
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|||||| ||||||| ||||||||||||||||| || |||||||| |||||||||| |
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| T |
11015151 |
atttgggttcatgttgatgctgcttatgctggtagtgcttgtatttgtccagagt |
11015205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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