View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_40 (Length: 303)
Name: NF15491_low_40
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 15328526 - 15328707
Alignment:
| Q |
19 |
tgatgatgaatgctaaattaagatagttggaggggaaaa-caatacaagggctttaaagttatggacttggaactctaattgtttcattccattgcatcc |
117 |
Q |
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| T |
15328526 |
tgatgatgaatgctaaattaagatagttggaggggaaaaacaatataagggctttaaagttaaggacttggaactctaattgtttcattccattgcatcc |
15328625 |
T |
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| Q |
118 |
acgtttgttttctcctacatgggccgtggagaaaggatttgaggcattttaatatcagatttgagttttgaccctctaagcc |
199 |
Q |
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| T |
15328626 |
acgtttgttttttcctacatggactgtggggaaaggatttgaggcattttaatatcagatttgagttttgaccctttaagcc |
15328707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 15328700 - 15328732
Alignment:
| Q |
205 |
tttaagccttaatatcatgaatttggtgttcta |
237 |
Q |
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| T |
15328700 |
tttaagccttaacatcatgaatttggtgttcta |
15328732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 12655643 - 12655581
Alignment:
| Q |
171 |
atcagatttgagttttgaccctctaagcccctcatttaagccttaatatcatgaatttggtgttct |
236 |
Q |
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| T |
12655643 |
atcagatttgagttat---cctcgaatcccctcatttaagccttaatgtcaagaatttggtgttct |
12655581 |
T |
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