View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_41 (Length: 299)
Name: NF15491_low_41
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 6163344 - 6163061
Alignment:
| Q |
1 |
tttattaagaaagaattgttatgtctagtagtaccttaaggctt-atatagccaattagactaacgattgtcttaacgagtttcgacgcattgnnnnnnn |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
6163344 |
tttattaagaaagaattgttatgtctagtagtaccttaaggctttatatagccaattagactaacggttgttttaacgagtttcgacgcattgttttttt |
6163245 |
T |
|
| Q |
100 |
nccagttt-aggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgtt |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6163244 |
--cagttttaggagttgtgttattaccagctcgttgtgggtgtttttggctggttttttgttatcttgaagatttttagctttgggtgtttggagttgtt |
6163147 |
T |
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| Q |
199 |
cagagg-nnnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtctatat |
283 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6163146 |
cagaggttttttttcctgttttatggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtctatat |
6163061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 28159057 - 28159234
Alignment:
| Q |
105 |
tttaggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgttcagagg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28159057 |
tttaggagttgtgttattaccagctcgttgtgggtgtttttggctggttttttgttatcttgaagatttttagctttgggtgtttggagttgttcagagg |
28159156 |
T |
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| Q |
205 |
nnnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtctatat |
283 |
Q |
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| T |
28159157 |
tttttttgttg-tttatggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtctatat |
28159234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 28158940 - 28159030
Alignment:
| Q |
1 |
tttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagtttcgacgcatt |
91 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
28158940 |
tttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagttttgacgcatt |
28159030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 106 - 283
Target Start/End: Complemental strand, 14359332 - 14359155
Alignment:
| Q |
106 |
ttaggagttgtgttattaccagctcgttgtgggtgattttggctgattttttgttatcttgaagatttttagctttgggtgtttggagttgttcagaggn |
205 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |
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| T |
14359332 |
ttaggagttgtgttattaccagcttgttgtgggtgtttttggctgtttttttgttatctttaaggtttttagctttgggtgtttgaagttgttcagaggt |
14359233 |
T |
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| Q |
206 |
nnnnnngctgttttatggtgtgggctgatttgggtattgatttagatgagattcaatggctatcaagtatgtctatat |
283 |
Q |
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| T |
14359232 |
ttttttgttgttttatggtgtgggctgatttgggtattgatttagatgggattcaatggctatcaagtatgtctatat |
14359155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14359386 - 14359329
Alignment:
| Q |
1 |
tttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattag |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14359386 |
tttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattag |
14359329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4839922 - 4839783
Alignment:
| Q |
1 |
tttattaagaaagaattgttatgtctagtagtaccttaaggcttatatagccaattagactaacgattgtcttaacgagtttcgacgcattgnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4839922 |
tttattaagaaagaattgttatgtctaatagtaccttaaggcttatatagccaattagactaacggttgtcttaacgagtttcgacgcattgtttttttt |
4839823 |
T |
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| Q |
101 |
ccagtttaggagttgtgttattaccagctcgttgtgggtg |
140 |
Q |
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| T |
4839822 |
cagttttaggcgttgtgttattaccggctcgttgtgggtg |
4839783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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