View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15491_low_53 (Length: 240)

Name: NF15491_low_53
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15491_low_53
NF15491_low_53
[»] chr8 (16 HSPs)
chr8 (13-226)||(3389339-3389552)
chr8 (20-226)||(3319451-3319657)
chr8 (20-226)||(3365870-3366076)
chr8 (20-226)||(3405824-3406030)
chr8 (20-225)||(3396873-3397078)
chr8 (31-225)||(3430129-3430329)
chr8 (20-225)||(31177573-31177778)
chr8 (98-225)||(3266566-3266693)
chr8 (102-225)||(3322932-3323055)
chr8 (16-225)||(7163711-7163920)
chr8 (34-210)||(3283971-3284147)
chr8 (98-225)||(3376841-3376968)
chr8 (98-225)||(13810019-13810146)
chr8 (141-225)||(3581237-3581326)
chr8 (54-225)||(13789862-13790033)
chr8 (20-225)||(3259796-3260004)
[»] chr5 (6 HSPs)
chr5 (20-226)||(15804833-15805039)
chr5 (20-225)||(20840011-20840216)
chr5 (20-225)||(20813572-20813777)
chr5 (47-225)||(30419589-30419767)
chr5 (98-225)||(12598114-12598241)
chr5 (33-110)||(12597097-12597174)
[»] chr7 (1 HSPs)
chr7 (48-225)||(8370221-8370398)
[»] chr2 (1 HSPs)
chr2 (31-225)||(14765816-14766010)
[»] chr3 (2 HSPs)
chr3 (16-225)||(6903974-6904183)
chr3 (98-225)||(32409926-32410053)
[»] scaffold0468 (1 HSPs)
scaffold0468 (16-225)||(3365-3574)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 3389339 - 3389552
Alignment:
Q  13 tcatcttcttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3389339 tcatcttcttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcatt 3389438  T
Q  113 aaaagacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3389439 aaaagacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagaccttcagttgctaagttttcaggt 3389538  T
Q  213 gttgatgaataaag 226  Q
    |||| |||||||||    
T  3389539 gttgttgaataaag 3389552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 3319657 - 3319451
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    |||||||||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||    
T  3319657 cttaacagtccatccatgtccaataactacaaaaatctccaaattgtcaccaactcctaattttgatacgacgccttgccaatcttcatcattaaatgac 3319558  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatg 219  Q
    |||||||||| || | ||||||| |||||||| |||||||||||||||||||||||||||| |||||| |||||||| |||| ||||| || ||||||||    
T  3319557 attactgtgtgtctcttgtaaatctggatagtgaattttgtgtaattaataatcaagacaccagtcaggcattcagtagctacgtttttagatgttgatg 3319458  T
Q  220 aataaag 226  Q
    |||||||    
T  3319457 aataaag 3319451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 3366076 - 3365870
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    |||||||||  ||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||| || | | |||||||||||||||||||||| |||    
T  3366076 cttaacagtaaatccatgcccaatagctacaaaaatctccaaattgttaccaactcctaaatttgacactatgccttgccaatcttcatcattaaacgac 3365977  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatg 219  Q
    |||| |||||||||  ||||||| || ||||| ||||||||||||||||| |||||||| ||||  |||| ||||||||| || ||||||||||||||||    
T  3365976 attattgtgtctcgtttgtaaatctgcatagtgaattttgtgtaattaatgatcaagacgctagcgagactttcagttgccaaattttcaggtgttgatg 3365877  T
Q  220 aataaag 226  Q
    |||||||    
T  3365876 aataaag 3365870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 3405824 - 3406030
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    |||| ||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| ||  ||| |||||||||||| ||||| | |    
T  3405824 cttagcagtcaatccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacaccttcccaatcttcatcgttaaaggtc 3405923  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatg 219  Q
    ||||||||||||| | |||| || || ||||| ||||||||||||||||| |||||||||||||| |||||||||||||| | ||||| | |||| ||||    
T  3405924 attactgtgtctctcttgtatatatgaatagtgaattttgtgtaattaatgatcaagacactagtgagacattcagttgccatgtttttaagtgtagatg 3406023  T
Q  220 aataaag 226  Q
    |||||||    
T  3406024 aataaag 3406030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 3396873 - 3397078
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||| |||||  ||| ||||| || ||  ||| ||||||||||||||||||||||    
T  3396873 cttaacagtcaatccatgcccaatagctacaaaaatctccacattgtcatcaacttttaaatttgacactacaccttcccaatcttcatcattaaaagac 3396972  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatg 219  Q
    |||| |||||| ||| |||||||||||||||| | ||||||||||||||| || ||||||||||| | ||||||| |||  | ||||| ||||||| | |    
T  3396973 attattgtgtcacgcttgtaaatttggatagtgagttttgtgtaattaatgattaagacactagtgatacattcaattggcaggttttgaggtgttaacg 3397072  T
Q  220 aataaa 225  Q
    ||||||    
T  3397073 aataaa 3397078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 225
Target Start/End: Complemental strand, 3430329 - 3430129
Alignment:
Q  31 atccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgatac--cacgtcttgccaatcttcatcattaaaagacattactgtg 128  Q
    |||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||||  |||   |||||||||||||||||| || ||| |||| |||    
T  3430329 atccatgcccaaaagctacaaaattctccacattgtcaccaactcctaaatttgatactacacactttgccaatcttcatcattgaacgaccttacggtg 3430230  T
Q  129 tctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacat----tcagttgctaagttttcaggtgttgatgaataa 224  Q
    ||| || ||||||| ||||| || ||||||||||||||||| |||||||||||||  ||||||    |||||||| | ||||||||||||||||||||||    
T  3430229 tcttgcttgtaaatctggatggtgaattttgtgtaattaatgatcaagacactagggagacattcaatcagttgccaggttttcaggtgttgatgaataa 3430130  T
Q  225 a 225  Q
    |    
T  3430129 a 3430129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 31177778 - 31177573
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    |||||||||  ||||||||||||||| |||||||| |||||||||||||||||| || || |||||  | ||  ||| |||||||||||||||||| |||    
T  31177778 cttaacagttaatccatgcccaatagctacaaaaacctccacattgtcaccaacaccaaaatttgaggcaacaccttcccaatcttcatcattaaaggac 31177679  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatg 219  Q
    |||| |||||| ||| ||||||| |||||||| | ||||||||||||||| || ||||||||||| ||||||||| ||   |  |||| |||||||||||    
T  31177678 attattgtgtcacgcttgtaaatctggatagtgagttttgtgtaattaatgattaagacactagtgagacattcacttatcagattttgaggtgttgatg 31177579  T
Q  220 aataaa 225  Q
    ||||||    
T  31177578 aataaa 31177573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 3266566 - 3266693
Alignment:
Q  98 ccaatcttcatcattaaaagacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagtt 197  Q
    |||||||||||||||||| |||| ||| ||||||||| ||||||||||||| ||  | ||||||||||||||||||||||||||||| |||||||||  |    
T  3266566 ccaatcttcatcattaaaggacactacagtgtctcgcttgtaaatttggatggtgcactttgtgtaattaataatcaagacactagtgagacattcacct 3266665  T
Q  198 gctaagttttcaggtgttgatgaataaa 225  Q
    || | |||||||| ||||||||||||||    
T  3266666 gccatgttttcagatgttgatgaataaa 3266693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 3322932 - 3323055
Alignment:
Q  102 tcttcatcattaaaagacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgcta 201  Q
    ||||||||||||||||||||||||||||||| | |||| |||||||| ||  ||||||||||||| || ||||||||| |||| |||||||||  ||| |    
T  3322932 tcttcatcattaaaagacattactgtgtctcccttgtatatttggattgtgcattttgtgtaattgatgatcaagacattagttagacattcaactgcca 3323031  T
Q  202 agttttcaggtgttgatgaataaa 225  Q
     |||||||| ||||||||||||||    
T  3323032 cgttttcagatgttgatgaataaa 3323055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 7163711 - 7163920
Alignment:
Q  16 tcttcttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaa 115  Q
    |||| |||||| || ||| || ||||| ||||||||||||||| ||||  ||||||  |||||  ||||||   || |  | ||||||||||||||||||    
T  7163711 tctttttaacaatcaatctattcccaaaagatacaaaaatctctacatcatcaccaggtcctagatttgatgttacattcttccaatcttcatcattaaa 7163810  T
Q  116 agacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgtt 215  Q
     |||||||||| ||||||| |||| || ||||| ||  | |||||||||||||| |||||||||| ||| |||||||||| | | | |||||||| ||||    
T  7163811 ggacattactgcgtctcgcttgtatatctggatggtgcactttgtgtaattaatgatcaagacaccagtaagacattcaggtcccatgttttcagatgtt 7163910  T
Q  216 gatgaataaa 225  Q
    ||||||||||    
T  7163911 gatgaataaa 7163920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 3283971 - 3284147
Alignment:
Q  34 catgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagacattactgtgtctcg 133  Q
    ||||||||| || |||||| ||||||||||||||||||  |||||  ||||||   | ||  | |||||||||||||||||| ||||||| ||| |||||    
T  3283971 catgcccaaaagctacaaatatctccacattgtcaccaggtcctagatttgatgttatgttcttccaatcttcatcattaaaggacattattgtatctcg 3284070  T
Q  134 cctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcag 210  Q
    | |||| || || | ||| |||||||| |||||||| ||||| |||||||  |||||||||||| | | ||||||||    
T  3284071 cttgtatatgtgaacagtgaattttgtataattaattatcaaaacactagcgagacattcagttaccatgttttcag 3284147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 3376968 - 3376841
Alignment:
Q  98 ccaatcttcatcattaaaagacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagtt 197  Q
    |||||||||||||||||||||||| |||||||||||| |||| || | ||| ||  | |||||||||||||||||||||||||  || ||||||| || |    
T  3376968 ccaatcttcatcattaaaagacataactgtgtctcgcttgtatatctcgatggtgcactttgtgtaattaataatcaagacaccggtaagacatttagct 3376869  T
Q  198 gctaagttttcaggtgttgatgaataaa 225  Q
     | |  ||||||| ||||||||||||||    
T  3376868 cccatattttcagatgttgatgaataaa 3376841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 13810146 - 13810019
Alignment:
Q  98 ccaatcttcatcattaaaagacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagtt 197  Q
    |||||||||||||||||| ||| | | |||  ||||| |||| || ||||| || |||||||||||||||| ||||||||||||| | |||||||| | |    
T  13810146 ccaatcttcatcattaaaggacctcaatgtacctcgcttgtatatctggatggtgaattttgtgtaattaacaatcaagacactaataagacattcggct 13810047  T
Q  198 gctaagttttcaggtgttgatgaataaa 225  Q
     | | ||||||||||| |||||||||||    
T  13810046 cccatgttttcaggtgctgatgaataaa 13810019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 3581326 - 3581237
Alignment:
Q  141 atttggatagttaattttgtgtaattaataatcaagaca-----ctagtcagacattcagttgctaagttttcaggtgttgatgaataaa 225  Q
    ||||||||||| ||||||||||||||||| |||||||||     ||||  ||||| |||||||||| |||||||||||||||||||||||    
T  3581326 atttggatagtaaattttgtgtaattaattatcaagacaagatactagggagacactcagttgctaggttttcaggtgttgatgaataaa 3581237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 13790033 - 13789862
Alignment:
Q  54 atctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagacattactgtgtctcgcctgtaaatttggatagtta 153  Q
    |||||||| ||||||||||| ||||| ||||| || ||  |||||||||||||||| ||||||||   || |||||||| | ||||   |||||| ||      
T  13790033 atctccaccttgtcaccaacacctaaatttgacactacaccttgccaatcttcatcgttaaaagaggataatgtgtctctcttgtatgcttggattgtgc 13789934  T
Q  154 attttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatgaataaa 225  Q
    |||||||||||||| | || |||||||   | |||||||| | | | | |||||||||||||||||||||||    
T  13789933 attttgtgtaattagtgattaagacaccgttaagacattcggctaccatgttttcaggtgttgatgaataaa 13789862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 3259796 - 3260004
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    ||||||| || ||||||| |||| || |||||||||||| |||| |||||||   ||||  |||||||  || |  | ||||||||||||||||||  ||    
T  3259796 cttaacaatcaatccatggccaaaagctacaaaaatctctacatcgtcaccaggacctagatttgatattacattcttccaatcttcatcattaaagaac 3259895  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaatt---aataatcaagacactagtcagacattcagttgctaagttttcaggtgttg 216  Q
    ||||  ||||||||| |||| || |||||| |  | ||||||| |||   || ||| ||||||||||| |||||||||| | | | | |||||| |||||    
T  3259896 attatcgtgtctcgcttgtatatctggatattgcactttgtgtgattaacaacaatgaagacactagttagacattcagctcccatgatttcagatgttg 3259995  T
Q  217 atgaataaa 225  Q
    |||||||||    
T  3259996 atgaataaa 3260004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 15805039 - 15804833
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    |||||||||  |||||||||||| || |||||| || |||||||||| |||||||||||| ||||| || | | |||||||||||||||||||||| |||    
T  15805039 cttaacagtaaatccatgcccaacagctacaaatatttccacattgttaccaactcctaaatttgacactatgccttgccaatcttcatcattaaacgac 15804940  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatg 219  Q
    |||| |||||||||  ||||||| |||||||| |||||||||| |||||| |||||||||||||| |||| ||||||||| || ||||||||||||||||    
T  15804939 attattgtgtctcgtttgtaaatctggatagtgaattttgtgtgattaatgatcaagacactagtgagactttcagttgccaaattttcaggtgttgatg 15804840  T
Q  220 aataaag 226  Q
    |||||||    
T  15804839 aataaag 15804833  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 20840216 - 20840011
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||  ||| ||||| |  ||  ||| ||||||||||||||||||||||    
T  20840216 cttaacagtaaatccatgcccaatagctacaaaaatctccacattgtcaccaacttttaaatttgacaatacaccttcccaatcttcatcattaaaagac 20840117  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatg 219  Q
    |||| ||||||   | ||||||| ||||| || |  |||||||||||||| |||||||||||||| | ||||||| |||  | ||||| ||||||||| |    
T  20840116 attattgtgtcatccttgtaaatctggattgtgagctttgtgtaattaatgatcaagacactagtgatacattcaattggcaggttttgaggtgttgacg 20840017  T
Q  220 aataaa 225  Q
    ||||||    
T  20840016 aataaa 20840011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 20813777 - 20813572
Alignment:
Q  20 cttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagac 119  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||  ||| ||||| || ||  ||| ||||||||||||||||||||||    
T  20813777 cttaacagtaaatccatgcccaatagctacaaaaatctccacattgtcaccaacttttaaatttgacactacaccttcccaatcttcatcattaaaagac 20813678  T
Q  120 attactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatg 219  Q
    |||| ||||||  || ||||||| ||||| || |  |||||||||||||| |||| ||||||| | | ||||||| ||   | ||||| ||||||||| |    
T  20813677 attattgtgtcatgcttgtaaatctggattgtgagctttgtgtaattaatgatcacgacactaatgatacattcaattagcaggttttgaggtgttgacg 20813578  T
Q  220 aataaa 225  Q
    ||||||    
T  20813577 aataaa 20813572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 30419767 - 30419589
Alignment:
Q  47 tacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagacattactgtgtctcgcctgtaaatttgg 146  Q
    |||||||||||||| |||||||||| ||||||| ||||||   ||  | |||||||||||||| ||||| |||||||||||||||||| |||| |  | |    
T  30419767 tacaaaaatctccatattgtcaccagctcctaaatttgattttacaccctgccaatcttcatcgttaaaggacattactgtgtctcgcttgtataaattg 30419668  T
Q  147 atagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatgaataaa 225  Q
    ||||| |||||||| |||||||||||||| |||| |   || ||||||||| | | |||||||  ||||||||||||||    
T  30419667 atagtgaattttgtataattaataatcaaaacaccaacgaggcattcagtttccatgttttcaaatgttgatgaataaa 30419589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 12598114 - 12598241
Alignment:
Q  98 ccaatcttcatcattaaaagacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagtt 197  Q
    ||||| |||||||||||||||||| || |||||| || |||| || | ||| ||  | ||||||||||||||||||||||||| ||| ||||||| || |    
T  12598114 ccaattttcatcattaaaagacataaccgtgtcttgcttgtatatcttgatggtgcactttgtgtaattaataatcaagacaccagtaagacatttagct 12598213  T
Q  198 gctaagttttcaggtgttgatgaataaa 225  Q
     | | |||||||| ||||||||||||||    
T  12598214 cccatgttttcagatgttgatgaataaa 12598241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 12597174 - 12597097
Alignment:
Q  33 ccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatca 110  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||| || |||||||  |   |||||||||||||||||    
T  12597174 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttgatattaaaccttgccaatcttcatca 12597097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 8370221 - 8370398
Alignment:
Q  48 acaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagacattactgtgtctcgcctgtaaatttgga 147  Q
    |||||||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||||||||| |||||||||||||||||| || |||| ||||    
T  8370221 acaaaaatctccacattgtcaccaactcctaaatttgatactacaccttgccaatcttcatcattaaacgacattactgtgtctcgcttgcaaatatgga 8370320  T
Q  148 tagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatgaataaa 225  Q
    | || ||||| |||| |||||| |||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||    
T  8370321 ttgtgaatttggtgtgattaatgatcaagacactagtgagacattcagttcctatgttttcaagtgttgatgaataaa 8370398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 31 - 225
Target Start/End: Original strand, 14765816 - 14766010
Alignment:
Q  31 atccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaaagacattactgtgtc 130  Q
    |||| ||||||| ||  ||||||||||| |||||||||||||||||||| |||||| | ||  |||||||||||||||||||||| ||||||| ||||||    
T  14765816 atccgtgcccaaaagcaacaaaaatctcaacattgtcaccaactcctaaatttgatgctacaccttgccaatcttcatcattaaacgacattattgtgtc 14765915  T
Q  131 tcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgttgatgaataaa 225  Q
    |||| |||| |||||||| || || ||||||| |||||| ||||||||||||||||||||||||||| | | | ||||| |||||||||||||||    
T  14765916 tcgcttgtagatttggatcgtgaactttgtgtgattaatgatcaagacactagtcagacattcagttcccatgatttcaagtgttgatgaataaa 14766010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 6903974 - 6904183
Alignment:
Q  16 tcttcttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaa 115  Q
    |||||||||||||| |||||||||||| || |||||||||| ||||| |||| |||||| |||| |||||||  ||    |||||||||||||| |||||    
T  6903974 tcttcttaacagtcaatccatgcccaaaagctacaaaaatccccacactgtccccaactgctaaatttgatattacactctgccaatcttcatcgttaaa 6904073  T
Q  116 agacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgtt 215  Q
     |||||||||||||||||| |||| || || |  ||  |||||||||||||||| ||||| |||| ||| |||||||||||| | | ||||||||||||     
T  6904074 ggacattactgtgtctcgcttgtatatatgaaacgtgcattttgtgtaattaatgatcaaaacaccagtgagacattcagtttccatgttttcaggtgtc 6904173  T
Q  216 gatgaataaa 225  Q
    ||||||||||    
T  6904174 gatgaataaa 6904183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 32409926 - 32410053
Alignment:
Q  98 ccaatcttcatcattaaaagacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagtt 197  Q
    |||||||||||||||||| || ||||  ||||||||| |||| || ||||| ||  | ||||| |||||||| |||||||  ||||| |||||||||  |    
T  32409926 ccaatcttcatcattaaaggaaattatcgtgtctcgcttgtatatctggatggtgcactttgtataattaatgatcaagatgctagtaagacattcaact 32410025  T
Q  198 gctaagttttcaggtgttgatgaataaa 225  Q
     | | |||||||| ||||||||||||||    
T  32410026 cccatgttttcagatgttgatgaataaa 32410053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 3365 - 3574
Alignment:
Q  16 tcttcttaacagtccatccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatcattaaa 115  Q
    |||||||||| ||| |||||||||||| || |||||||||| |||||||||| |||||| |||| |||||||  ||    |||||||||||||  |||||    
T  3365 tcttcttaacggtcaatccatgcccaaaagctacaaaaatccccacattgtccccaactgctaaatttgatattacactctgccaatcttcattgttaaa 3464  T
Q  116 agacattactgtgtctcgcctgtaaatttggatagttaattttgtgtaattaataatcaagacactagtcagacattcagttgctaagttttcaggtgtt 215  Q
     ||||||||||| ||| || |||| || ||||  || ||||||||||||||||| ||||| ||||| || |||||||||||| | | ||||||||||||     
T  3465 ggacattactgtttcttgcttgtatatatggagtgtgaattttgtgtaattaattatcaaaacactggtgagacattcagtttccatgttttcaggtgtg 3564  T
Q  216 gatgaataaa 225  Q
    ||||||||||    
T  3565 gatgaataaa 3574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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