View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_55 (Length: 227)
Name: NF15491_low_55
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_55 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 3589301 - 3589082
Alignment:
| Q |
8 |
gtgactcatttgcaaacttagcagcaacttcctgaatctcttctggtgaaagagattgatgaccaacaccatgattcacagctacattgatggtaagagg |
107 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3589301 |
gtgactcatttgcaaacttagcagcaacgtcttgaatctcttctggtgaaagagattgatgaccaacaccatgattcacagctacattgatggtaagagg |
3589202 |
T |
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| Q |
108 |
tgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaac |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3589201 |
tgtgttagggaaattgaaacttgcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaac |
3589102 |
T |
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| Q |
208 |
catattctctccctactatt |
227 |
Q |
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|||||||||||||||||||| |
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| T |
3589101 |
catattctctccctactatt |
3589082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 3551589 - 3551372
Alignment:
| Q |
10 |
gactcatttgcaaacttagcagcaacttcctgaatctcttctggtgaaagagattgatgaccaacaccatgattcacagctacattgatggtaagaggtg |
109 |
Q |
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|||||||| ||||| || ||||||| || || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3551589 |
gactcattggcaaatttcgcagcaatctcttggatttcttctggtgaaagagattggtgaccaacaccatgattcacagctacattgatggtaagaggtg |
3551490 |
T |
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| Q |
110 |
tgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaacca |
209 |
Q |
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| T |
3551489 |
tgttagggaaattgaaacttgcatgaggaccacgtagacaataaagggctgcatcaaatgctcttgctgctttctcttgtgtgtcatatgatcctaacca |
3551390 |
T |
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| Q |
210 |
tattctctccctactatt |
227 |
Q |
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|||||||||||||||||| |
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| T |
3551389 |
tattctctccctactatt |
3551372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 3562760 - 3562546
Alignment:
| Q |
13 |
tcatttgcaaacttagcagcaacttcctgaatctcttctggtgaaagagattgatgaccaacaccatgattcacagctacattgatggtaagaggtgtgt |
112 |
Q |
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||||| ||||| || ||||||| || |||||||||| || |||||||| | |||| ||||| ||||| | | ||| |||||||||||||||||||| |
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| T |
3562760 |
tcattggcaaattttgcagcaatctcttgaatctcttgaggggaaagagagttgtgactaacactatgatgaaaaactaaattgatggtaagaggtgtgt |
3562661 |
T |
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| Q |
113 |
tagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatat |
212 |
Q |
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| T |
3562660 |
tagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatat |
3562561 |
T |
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| Q |
213 |
tctctccctactatt |
227 |
Q |
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||||||||||||||| |
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| T |
3562560 |
tctctccctactatt |
3562546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 3574000 - 3573790
Alignment:
| Q |
8 |
gtgactcatttgcaaacttagcagcaacttcctgaatctcttctggtgaaagagattgatgaccaacaccatgattcacagctacattgatggtaagagg |
107 |
Q |
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|||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||| | |||| ||| | ||||||||||||||||| ||| |
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| T |
3574000 |
gtgactcatttgcatacttagcagcaacttcttgaatttcttgtggtgaaagagattggtaacca------tga---aaagctacattgatggtaaaagg |
3573910 |
T |
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| Q |
108 |
tgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaac |
207 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573909 |
tgtattagggaaattgaaacttgcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaac |
3573810 |
T |
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| Q |
208 |
catattctctccctactatt |
227 |
Q |
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||||||||||| | |||||| |
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| T |
3573809 |
catattctctcacgactatt |
3573790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 10025440 - 10025229
Alignment:
| Q |
8 |
gtgactcatttgcaaacttagcagcaacttcctgaatctcttctggtgaaagagattgatgaccaacaccatgattcacagctacattgatggtaagagg |
107 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | | ||||||| | ||||||||||||||||||||| |
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| T |
10025440 |
gtgactcatttgcaaacttagcagcaacttcttgaatctcttgtggtgaaagagattggtta-----accatga---aaagctacattgatggtaagagg |
10025349 |
T |
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| Q |
108 |
tgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaac |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
10025348 |
tgtattagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaac |
10025249 |
T |
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| Q |
208 |
catattctctccctactatt |
227 |
Q |
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||||||||||| | |||||| |
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| T |
10025248 |
catattctctcacgactatt |
10025229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 48645655 - 48645767
Alignment:
| Q |
103 |
agaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatc |
202 |
Q |
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|||||||| | | ||||||||||| | |||||| ||||||| |||||||| || || ||||||||||| |||||||||| || || |||||||||| |
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| T |
48645655 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccacgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
48645754 |
T |
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| Q |
203 |
ctaaccatattct |
215 |
Q |
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| T |
48645755 |
ctaaccatattct |
48645767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 48654068 - 48654180
Alignment:
| Q |
103 |
agaggtgtgttagggaaattgaaactagcatgaggaccacgtagacaatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatc |
202 |
Q |
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|||||||| | | ||||||||||| | |||||| ||||||| |||||||| || || ||||||||||| |||||||||| || || |||||||||| |
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| T |
48654068 |
agaggtgtatcaaggaaattgaaatttgcatgacgaccacgaagacaataaagtgcagcatcaaatgctttagctgctttctcagctgaatcatatgatc |
48654167 |
T |
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| Q |
203 |
ctaaccatattct |
215 |
Q |
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||||||||||||| |
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| T |
48654168 |
ctaaccatattct |
48654180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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