View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_56 (Length: 225)
Name: NF15491_low_56
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 27776390 - 27776584
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776390 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
27776489 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagt |
207 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776490 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagt |
27776584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 10280138 - 10280001
Alignment:
| Q |
42 |
aggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttccc |
141 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||| ||| ||||||||||| ||||| || |||||||||||| ||| || || | | || ||| |
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| T |
10280138 |
aggatcaacattcttcaaagcataccaaacagcagtattaaccttaaatccagatccaaaagccatttgccaaatcttatgtccctttttaactctcccc |
10280039 |
T |
|
| Q |
142 |
ttagcttcacaataagccaaaacataccaaacagaact |
179 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
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| T |
10280038 |
ttagcttcacaataagacaattcataccaaacagaact |
10280001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 19742751 - 19742945
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19742751 |
tcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaatgcaatttgcc |
19742850 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagt |
207 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
19742851 |
aaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagt |
19742945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 19797337 - 19797143
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
19797337 |
tcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacagcagtgttacacttaaatccagacccaaatgcaatttgcc |
19797238 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagt |
207 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
19797237 |
aaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagt |
19797143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 19539708 - 19539902
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
19539708 |
tcatcactccaaggattgatctctttaattggatcaacattctttaatgcacaccaaacagcagtgttacacttaaatctagacccaaatgcaatttgcc |
19539807 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagt |
207 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||| || ||||||||||||||| |
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|
| T |
19539808 |
aaatcctatcaccttttcttattcttcctttagcttcacaatatgccaactcataccaaacaaaactacttgaagtgttaccatatctataaagt |
19539902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 19671631 - 19671825
Alignment:
| Q |
13 |
tcatcactccaaggattaatctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgcc |
112 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
19671631 |
tcatcactccaaggattgatctctttaattggatcaacattccttaatgcacaccaaacaggagtgttacacttaaatccagacccaaatgcaatttgcc |
19671730 |
T |
|
| Q |
113 |
aaatcctatcacctttccttatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctataaagt |
207 |
Q |
| |
|
|||||||||||||||| | || ||||| |||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
19671731 |
aaatcctatcaccttttcatactcttcctttagcttcacaatatgccaactcataccaaacagaactacttgaagtgttaccatatctataaagt |
19671825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 202
Target Start/End: Complemental strand, 34053438 - 34053268
Alignment:
| Q |
32 |
tctccttaacaggatcaacattccttaaagcacaccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttcct |
131 |
Q |
| |
|
|||||||| | |||||||| |||| || |||| ||| |||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |
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|
| T |
34053438 |
tctccttagctggatcaacggtcctcaatgcacgccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttttct |
34053339 |
T |
|
| Q |
132 |
tatccttcccttagcttcacaataagccaaaacataccaaacagaactacttgaagtatttccatatctat |
202 |
Q |
| |
|
||||| || ||||||||| ||||||||| ||||||| | |||||||| |||||||| ||| |||||| |
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|
| T |
34053338 |
aatcctccctttagcttcagtataagccaattcataccataatgaactactagaagtattaccaaatctat |
34053268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 15239705 - 15239569
Alignment:
| Q |
66 |
ccaaacagcagtgttacatttaaatccagacccaaatgcaatttgccaaatcctatcacctttccttatccttcccttagcttcacaataagccaaaaca |
165 |
Q |
| |
|
|||||||||| | ||||| ||||| ||||| |||||||||||||||||| | ||||||||||| | ||||| || ||||||||| ||||||||| || |
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|
| T |
15239705 |
ccaaacagcactattacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattca |
15239606 |
T |
|
| Q |
166 |
taccaaacagaactacttgaagtatttccatatctat |
202 |
Q |
| |
|
||||| | |||||||| ||||| || ||| |||||| |
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|
| T |
15239605 |
taccacaatgaactactagaagtgttaccaaatctat |
15239569 |
T |
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