View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15491_low_58 (Length: 211)

Name: NF15491_low_58
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15491_low_58
NF15491_low_58
[»] chr4 (1 HSPs)
chr4 (16-202)||(52721048-52721234)
[»] chr8 (3 HSPs)
chr8 (16-203)||(10382468-10382676)
chr8 (83-202)||(9484387-9484506)
chr8 (20-81)||(9484529-9484588)
[»] chr3 (1 HSPs)
chr3 (83-134)||(46993711-46993762)
[»] chr6 (1 HSPs)
chr6 (155-202)||(2038717-2038765)
[»] chr5 (5 HSPs)
chr5 (155-202)||(25074914-25074962)
chr5 (155-202)||(25132883-25132931)
chr5 (146-202)||(3136044-3136101)
chr5 (155-202)||(25074404-25074452)
chr5 (155-202)||(25132373-25132421)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 52721048 - 52721234
Alignment:
Q  16 cacagaagcacacattggacaggagtgagaccaacacatgagcatgtaatagtttaacaaattaaacgggtctcttgattttttaatcaagaagtataag 115  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52721048 cacagaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaatgggtctcttgattttttaatcaagaagtataag 52721147  T
Q  116 atcaatttttacagcttatgaaatttttacaggttgtttgatgttgctgtggtggggagtaagaagagagaatggtggtggaaggtg 202  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||| |||||||    
T  52721148 atcaatttttacagcttatggaatttttacgggttgtttgatgttgctgtggtggggaggaaggagagagaagggtggttgaaggtg 52721234  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 10382468 - 10382676
Alignment:
Q  16 cacagaagcacacattggacaggagtgagaccaacacatgagcatgtaatagtttaacaaattaaac---------------------gggtctcttgat 94  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||                      ||||||||| ||    
T  10382468 cacaaaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccaccatatgggtctcttcat 10382567  T
Q  95 tttttaatcaagaagtataagatcaatttttacagcttatgaaatttttacaggttgtttgatgttgctgtggtggggagtaagaagagagaatggtggt 194  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  10382568 tttttaatcaagaagtataatatcaatttttacagcttatggaatttttaaaggttgtttgatgttgctgtggtggggaggaaggagagagaagggtggt 10382667  T
Q  195 ggaaggtga 203  Q
     ||||||||    
T  10382668 tgaaggtga 10382676  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 9484506 - 9484387
Alignment:
Q  83 gggtctcttgattttttaatcaagaagtataagatcaatttttacagcttatgaaatttttacaggttgtttgatgttgctgtggtggggagtaagaaga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||| ||| |||    
T  9484506 gggtctcttgattttttaatcaagaagtataagatcaatttttacagcttatagaatttttacatgttgtttgatgttgctgtggtggggaggaaggaga 9484407  T
Q  183 gagaatggtggtggaaggtg 202  Q
    ||||| |||||| |||||||    
T  9484406 gagaagggtggttgaaggtg 9484387  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 9484588 - 9484529
Alignment:
Q  20 gaagcacacattggacaggagtgagaccaacacatgagcatgtaatagtttaacaaattaaa 81  Q
    |||| |||||||||||| ||||||||||| || |  ||||||||||||||||||||||||||    
T  9484588 gaagtacacattggacatgagtgagaccatcata--agcatgtaatagtttaacaaattaaa 9484529  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 46993762 - 46993711
Alignment:
Q  83 gggtctcttgattttttaatcaagaagtataagatcaatttttacagcttat 134  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  46993762 gggtcacttgattttttaatcaagaaggataagatcaatttttacagcttat 46993711  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 2038765 - 2038717
Alignment:
Q  155 gatgttgctg-tggtggggagtaagaagagagaatggtggtggaaggtg 202  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  2038765 gatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtg 2038717  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 25074914 - 25074962
Alignment:
Q  155 gatgttgctg-tggtggggagtaagaagagagaatggtggtggaaggtg 202  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  25074914 gatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtg 25074962  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 25132883 - 25132931
Alignment:
Q  155 gatgttgctg-tggtggggagtaagaagagagaatggtggtggaaggtg 202  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  25132883 gatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtg 25132931  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 3136101 - 3136044
Alignment:
Q  146 aggttgtttgatgttgctg-tggtggggagtaagaagagagaatggtggtggaaggtg 202  Q
    |||||||||||||||| || |||||||||| ||| |||||||| ||||||||||||||    
T  3136101 aggttgtttgatgttggtggtggtggggaggaaggagagagaagggtggtggaaggtg 3136044  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 25074452 - 25074404
Alignment:
Q  155 gatgttgctg-tggtggggagtaagaagagagaatggtggtggaaggtg 202  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||||||    
T  25074452 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaggtg 25074404  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 25132421 - 25132373
Alignment:
Q  155 gatgttgctg-tggtggggagtaagaagagagaatggtggtggaaggtg 202  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||||||    
T  25132421 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaggtg 25132373  T

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