View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_59 (Length: 209)
Name: NF15491_low_59
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 10790790 - 10790966
Alignment:
| Q |
15 |
atgaagaaagtgctaaagttaaaattgagactatagatgatgagaataaggtaatcacatttagcctctttgatggaaatgtgagtgagagttacaagag |
114 |
Q |
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| T |
10790790 |
atgaagaaagtgctaaagttaaaattgagactatagatgatgagaataaggtaatcacatttagcctctttgatggaaatgtgagtgagagttacaagag |
10790889 |
T |
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| Q |
115 |
tttcaagggaacattacaagtgtttgattgcgaattagatattaacgaatatggttcacttgttagatggacttttg |
191 |
Q |
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| T |
10790890 |
tttcaagggaacattgcaagtgtttgattgcgaattagatattaacgaatatggttcacttgttagatggacttttg |
10790966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 10772042 - 10772163
Alignment:
| Q |
21 |
aaagtgctaaagttaaaattgagactatagatgatgagaataaggtaatcacatttagcctctttgatggaaatgtgagtgagagttacaagagtttcaa |
120 |
Q |
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| T |
10772042 |
aaagtgctaaagaaaaagttgagactatagatgatgacaataaggtaattacatatagcttctttgatggggaagtgggtgagagttacaagagtttaaa |
10772141 |
T |
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| Q |
121 |
gggaacattacaagtgtttgat |
142 |
Q |
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| T |
10772142 |
ggtaacattacaagtgattgat |
10772163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 10777329 - 10777444
Alignment:
| Q |
21 |
aaagtgctaaagttaaaattgagactatagatgatgagaataaggtaatcacatttagcctctttgatggaaatgtgagtgagagttacaagagtttcaa |
120 |
Q |
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| T |
10777329 |
aaagtgctaaagcgaaaattgagaatatagatgatgacaataagataatcatatatagcttctttgatggggacgtgagtgagaattacaagagtttaaa |
10777428 |
T |
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| Q |
121 |
gggaacattacaagtg |
136 |
Q |
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| T |
10777429 |
ggcaatattacaagtg |
10777444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 10784112 - 10784227
Alignment:
| Q |
21 |
aaagtgctaaagttaaaattgagactatagatgatgagaataaggtaatcacatttagcctctttgatggaaatgtgagtgagagttacaagagtttcaa |
120 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||| |||||| || |||| | ||||||||| | |||||||| | |||||||||||| || |
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| T |
10784112 |
aaagtgctaaagcaaaaattgagactatagatgatgacaataagataatcatatatagcatttttgatggagaagtgagtgaaaattacaagagtttaaa |
10784211 |
T |
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| Q |
121 |
gggaacattacaagtg |
136 |
Q |
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|| || |||||||||| |
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| T |
10784212 |
ggcaatattacaagtg |
10784227 |
T |
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