View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15491_low_6 (Length: 582)
Name: NF15491_low_6
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_6 |
 | |
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| [»] scaffold0528 (2 HSPs) |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 544; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 16 - 575
Target Start/End: Original strand, 31052405 - 31052964
Alignment:
| Q |
16 |
actactttgaaaaataacattcaaaatcaacacatcatttgtagaacatggtcatcgactgagtgaaaaactatttataggatataacctaaatgttctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
31052405 |
actactttgaaaaataacattcaaaatcaacacatcatttgtagaacatggtcatcgactgagtgaaaaactatttataggataaaaccttaatgttctt |
31052504 |
T |
|
| Q |
116 |
caccatttctcgactctcagacttcttacaacatgacatatcagatcaaaatcatcctatttaccactcccctgaactacaaaggaatagttaatacagc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052505 |
caccatttctcgactctcagacttcttacaacatgacatatcagatcaaaatcatcctatttaccactcccctgaactacaaaggaatagttaatacagc |
31052604 |
T |
|
| Q |
216 |
aagatgaattttatttctttgaacatataataccagattagagtcttttattataatattgaatatgaagactcacttaactataacatgcaatttcaag |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052605 |
aagatgaattttatttctttgaacatataataccacattagagtcttttattataatattgaatatgaagactcacttaactataacatgcaatttcaag |
31052704 |
T |
|
| Q |
316 |
atcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctctt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052705 |
atcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccctctt |
31052804 |
T |
|
| Q |
416 |
agctccttcaggcatttcccagtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgc |
515 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052805 |
agctccttcaggcatttcccaatcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattcttcgc |
31052904 |
T |
|
| Q |
516 |
ccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatg |
575 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31052905 |
ccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatg |
31052964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 298 - 575
Target Start/End: Original strand, 31039197 - 31039474
Alignment:
| Q |
298 |
ataacatgcaatttcaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagt |
397 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31039197 |
ataacatgcaagttcaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagt |
31039296 |
T |
|
| Q |
398 |
gtcaatgtcttccctcttagctccttcaggcatttcccagtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaag |
497 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31039297 |
gtcaatgtcttccctcttagctccttcaggcatttcccagtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaag |
31039396 |
T |
|
| Q |
498 |
ccggggcaaattcttcgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatg |
575 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31039397 |
ccggggcaaattcttcgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatg |
31039474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 298 - 520
Target Start/End: Original strand, 31048420 - 31048642
Alignment:
| Q |
298 |
ataacatgcaatttcaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagt |
397 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31048420 |
ataacatgcaagttcaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagt |
31048519 |
T |
|
| Q |
398 |
gtcaatgtcttccctcttagctccttcaggcatttcccagtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaag |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31048520 |
gtcaatgtcttccctcttagctccttcaggcatttcccagtcaaatgaacagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaag |
31048619 |
T |
|
| Q |
498 |
ccggggcaaattcttcgcccaga |
520 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
31048620 |
ccggggcaaattcttcgcccaga |
31048642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 313 - 575
Target Start/End: Original strand, 31071534 - 31071796
Alignment:
| Q |
313 |
aagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagtgtcaatgtcttccct |
412 |
Q |
| |
|
||||||| || |||||||| | ||||||||||| ||| ||||||||||||||||||||||||| |||||| | |||||| | |||| || | ||||| |
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|
| T |
31071534 |
aagatcaaacacattcaatcctcttcttagcaataaggcagagaggatttttcttgtgttgaacaagtcctggaagaccatcaatgtctatattttccca |
31071633 |
T |
|
| Q |
413 |
cttagctccttcaggcatttcccagtcaaatgaatagagaagattagaaagtacaaggtcgatggtagcaatagccatgtttaagccggggcaaattctt |
512 |
Q |
| |
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||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||| |||| |
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| T |
31071634 |
ctttactccttcaggcatttcccaatcaaacaaatagagaagattagcaagtacaaggtccacagtagcaattgccatgtttaagccggggcaaactctt |
31071733 |
T |
|
| Q |
513 |
cgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatcacttcctatg |
575 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
31071734 |
cgccccgagccaaatggaatcagctcgaaatcttgtccttttaaatctatatcactacctatg |
31071796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 31034075 - 31034222
Alignment:
| Q |
31 |
aacattcaaaatcaacacatcatttgtagaacatggtcatcgactgagtgaaaaactatttataggatataacctaaatgttcttcaccatttctcgact |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||| ||||| ||||||||| |||||||||||| |
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|
| T |
31034075 |
aacattcaaaatcaacacatcatttgtagaactaggtcatcaaccgagtgaaaaactatgtataggataaaaccttaatgttctt---catttctcgact |
31034171 |
T |
|
| Q |
131 |
ctcagacttcttacaacatgacatatcagatcaaaatcatcctatttacca |
181 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
31034172 |
ctcagacttcttacaacacgacatatcagatcaaactcatcctatttacca |
31034222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 31039034 - 31039126
Alignment:
| Q |
209 |
atacagcaagatgaattttatttctttgaacatataataccagattagagtcttttattataatattgaatatgaagactcacttaactataa |
301 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||||||| || ||||||||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
31039034 |
atacagaaagatgatttttatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataa |
31039126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 31048257 - 31048349
Alignment:
| Q |
209 |
atacagcaagatgaattttatttctttgaacatataataccagattagagtcttttattataatattgaatatgaagactcacttaactataa |
301 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||||||| || ||||||||||||||| |||||| | |||||||||||||||||||||| |
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|
| T |
31048257 |
atacagaaagatgatttttatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataa |
31048349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 148
Target Start/End: Original strand, 31034219 - 31034250
Alignment:
| Q |
117 |
accatttctcgactctcagacttcttacaaca |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31034219 |
accatttctcgactctcagacttcttacaaca |
31034250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 31071414 - 31071447
Alignment:
| Q |
215 |
caagatgaattttatttctttgaacatataatac |
248 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
31071414 |
caagatgaattttatatctttgaacatataatac |
31071447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: scaffold0528
Description:
Target: scaffold0528; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 298 - 436
Target Start/End: Complemental strand, 139 - 1
Alignment:
| Q |
298 |
ataacatgcaatttcaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagt |
397 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
139 |
ataacatgcaagttcaagatcacacgcattcaattcgcttcttagcaacaagacagagaggatttttcttgtgttgaataagtccggcttgaccatgagt |
40 |
T |
|
| Q |
398 |
gtcaatgtcttccctcttagctccttcaggcatttccca |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39 |
gtcaatgtcttccctcttagctccttcaggcatttccca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0528; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 302 - 210
Alignment:
| Q |
209 |
atacagcaagatgaattttatttctttgaacatataataccagattagagtcttttattataatattgaatatgaagactcacttaactataa |
301 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||||||||| || ||||||||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
302 |
atacagaaagatgatttttatttctatgaacatataatacaaggatagagtcttttattacaatattaatcatgaagactcacttaactataa |
210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 566
Target Start/End: Complemental strand, 15965 - 15900
Alignment:
| Q |
501 |
gggcaaattcttcgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatca |
566 |
Q |
| |
|
||||||||||| ||||| | |||||| || |||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
15965 |
gggcaaattctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaatctatatca |
15900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 566
Target Start/End: Original strand, 3630120 - 3630185
Alignment:
| Q |
501 |
gggcaaattcttcgcccagaaccaaacggaatcagctcaaaatcttgtccttttaaatctatatca |
566 |
Q |
| |
|
||||||||||| ||||| | |||||| || |||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
3630120 |
gggcaaattctacgccctgcaccaaatggtatcaactcaaaatcccgtcctttaaaatctatatca |
3630185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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