View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_7 (Length: 577)
Name: NF15491_low_7
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 21 - 566
Target Start/End: Original strand, 31142374 - 31142919
Alignment:
| Q |
21 |
ctgagttacttaaccagacccggacctgagtatatactaaattctaaataaaatgagaaaagtaggagacaacaatgtaattgatgaaatttctcaatga |
120 |
Q |
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| T |
31142374 |
ctgagttacttaaccagacccggacctgagtatatactaaattctaaataaaatgagaaaagtaggagacaacaatgtaattgatgaaatttctcaatga |
31142473 |
T |
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| Q |
121 |
gaaaattatagcaatggagaaatattaatgaagaaatttaaatttacaaaacatatctaaagaatgagcgaataaaattgatcacacagcgaagagtttc |
220 |
Q |
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| T |
31142474 |
gaaaattatagcaatggagaaatattaatgaagaaatttaaatttacaaaacatatctaaagaatgagcgaataaaattgatcacacagcgaagagtttc |
31142573 |
T |
|
| Q |
221 |
taaccttcttggagacaaggtttggcgagtggtagtccacgcatagattctgtggttttgcttagagttagggataaaggtaaagaaggtgtagtattcc |
320 |
Q |
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| T |
31142574 |
taaccttcttggagacaaggtttggcgagtggtagtccacgcatagattctgtggttttgcttagagttagggataaaggtaaagaaggtgtagtattcc |
31142673 |
T |
|
| Q |
321 |
atgttttcaaatatattaaatgttaaataagtttttgatgttaaggttcaacaatcatttattcgtgtaaaaggctgaaatttgtttgtgattcactgta |
420 |
Q |
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| T |
31142674 |
atgttttcaaatatattaaatgttaaataagtttttgatgttaaggttcaacaatcatttattcgtgtaaaaggctgaaatttgtttgtgattcactgta |
31142773 |
T |
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| Q |
421 |
tagtacatacacagttatgacatgttataaatttgtttgacttaatctccatctggtacaacaacagagactggagttagtaacactttacagttgtcac |
520 |
Q |
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| T |
31142774 |
tagtacatacacagttatgacatgttataaatttgtttgacttaatctccatctggtacaacaacagagactggagttagtaacactttacagttgtcac |
31142873 |
T |
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| Q |
521 |
taatttgatttagcaacatttgatcgttaagtatcattcatctcac |
566 |
Q |
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| T |
31142874 |
taatttgatttagcaacatttgatcgttaagtatcattcatttcac |
31142919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 227
Target Start/End: Original strand, 31059967 - 31060074
Alignment:
| Q |
120 |
agaaaattatagcaatggagaa-atattaatgaagaaatttaaatttacaaaacatatctaaagaatgagcgaataaaattgatcacacagcgaagagtt |
218 |
Q |
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||||||||| | |||||||||| | || |||||| ||||||| |||| ||| ||| |||||| | ||||||||||||||||||||||| | |||||||| |
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| T |
31059967 |
agaaaattaaaccaatggagaagaaatcaatgaacgaatttaa-tttagaaatcatgtctaaatattgagcgaataaaattgatcacacggggaagagtt |
31060065 |
T |
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| Q |
219 |
tctaacctt |
227 |
Q |
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||| ||||| |
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| T |
31060066 |
tcttacctt |
31060074 |
T |
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