View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_8 (Length: 534)
Name: NF15491_low_8
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 39583732 - 39583495
Alignment:
| Q |
9 |
agcgaaggcgaatgctccattgtatgcatatgcagatgattatggctgcggctgcggctgcggctgcattgatatgtatctattacctgaaatatttgga |
108 |
Q |
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| T |
39583732 |
agcgaaggcgaatgctccattgtatgcatatgcagatgattatggctgcggctgc------------attgatatgtatctattacctgaaatatttgga |
39583645 |
T |
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| Q |
109 |
agaaagtgacaggtaaagtgaagacacagacacagatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcct |
208 |
Q |
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| T |
39583644 |
agaaagtgacagtgaaagtgaagacacagacacagatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcct |
39583545 |
T |
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| Q |
209 |
gatcaatagaaaaggaaacaactgcggcgtgttttacttcttttctgcta |
258 |
Q |
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| T |
39583544 |
gatcaatagaaaaggaaacaactgcggcgtgttttacttcttttctgcta |
39583495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 326 - 516
Target Start/End: Complemental strand, 39583427 - 39583237
Alignment:
| Q |
326 |
atgaacttctgaagtctcaatataagcatttctgatctctagtttttctttccctttcaaaatattggttttcacagcatttaccataaatgcttatatg |
425 |
Q |
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| T |
39583427 |
atgaacttctgaagtctcagtataagcatttctgatctctagtttttctttccctttcaaaatattggttttcgcagcatttaccataaatgcttatatg |
39583328 |
T |
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| Q |
426 |
gcaagtgttgacctgagnnnnnnntggtgtgacattctcatctcttgtgccagccagcaatgataacatgtgcttttgcattggagacaga |
516 |
Q |
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| T |
39583327 |
gcaagtgttgacctgagaaaaaaatggtgtgacattctcatctcttgtgccagccagcaatgataacatgtgcttttgcattggaggcaga |
39583237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 39627296 - 39627425
Alignment:
| Q |
107 |
gaagaaagtgacaggtaaagtgaagacacagacacagatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttc |
206 |
Q |
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||||||||||| || ||||||||||||| ||||| |||| |||||| |||||||||| ||||| ||||| ||||||||| |||||||||| ||||||| |
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| T |
39627296 |
gaagaaagtgatagtgaaagtgaagacacggacactgataatgatacagatactgatatcgatacagaaacggaaagtactggaaggacaaatcaagttc |
39627395 |
T |
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| Q |
207 |
---ctgatcaatagaaaaggaaacaactgc |
233 |
Q |
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| T |
39627396 |
ttgatgatcaatagaaaaggaaacagctgc |
39627425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 39616604 - 39616697
Alignment:
| Q |
143 |
gatagtgatacggatactgatagtgataccgaaactgaaagtacttgaaggacaaaccaagttcc---tgatcaatagaaaaggaaacaactgc |
233 |
Q |
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| T |
39616604 |
gatagtgatacagatactgatattgatacggaaactgaaagtactggaaggacaaatgaagttcctgatgatcaatagaaaaggaaacagctgc |
39616697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 47532759 - 47532851
Alignment:
| Q |
58 |
ggctgcggctgcggctgcattgatatgtatctattacctgaaatatttggaagaaagtgacaggtaaagtgaagacacagacacagatagtga |
150 |
Q |
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| T |
47532759 |
ggctgcagctgcagctgccttgatatgcatctatgacctgtaccttttggaagaaagtgacagtgaaagtgaagccacagatactgatagtga |
47532851 |
T |
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