View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15491_low_9 (Length: 519)
Name: NF15491_low_9
Description: NF15491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15491_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 335 - 501
Target Start/End: Original strand, 26647619 - 26647785
Alignment:
| Q |
335 |
gcatactggttttggagatggaagtgggactggaatagcgagaaccattctcatctcagtggggggcattctcttggtgatagtttatcgtctttgtaaa |
434 |
Q |
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| T |
26647619 |
gcatactggttttggagatggaagtgggactggaatagtgagaaccattctcatctcagtggggggcattctcttggtgatagtttatcgtctttgtaaa |
26647718 |
T |
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| Q |
435 |
tttcattactgcaaggagattattaatccatccattgtttagcattgcagtatttataagggaattt |
501 |
Q |
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| T |
26647719 |
tttcattactgcaaggagattattaatccatccattgtttagcattgcagtatttataagggaattt |
26647785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26647567 - 26647615
Alignment:
| Q |
1 |
aaattcccttatgttttactcttccatgtacatcatggtatgcacatac |
49 |
Q |
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| T |
26647567 |
aaattcccttatgttttactcttccatgtacatcatggtatgcacatac |
26647615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 58 - 311
Target Start/End: Original strand, 36992609 - 36992855
Alignment:
| Q |
58 |
ccttagatattcttatagctaatatttagcttcccaacatatattctttaaacttaccaagttttaatcctttaggaaaaccataacttaatcacacaat |
157 |
Q |
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| T |
36992609 |
ccttagattttcttatatctaatatttagcttgccaacatatatcctttaaacttac-aagttttaatcctttaggaaaatcatagcttaatcacacaat |
36992707 |
T |
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| Q |
158 |
ttgtcattttctggtcccatgactacatacttataaacttcatcacaatta--cactacacaagttcactaggatcaataaaattagtatgagatcaagg |
255 |
Q |
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| T |
36992708 |
tcatcattttt-------atg-ctacatacttataaacttcatcacaattatacactacacaagttcactaggatcaataaaattagtatgagatcaagg |
36992799 |
T |
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| Q |
256 |
ataaccatctaatagtaagattacacacattttgatattccctgggaagtatcctt |
311 |
Q |
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| T |
36992800 |
ataacgatctaatagtaagataacacacaatttgatattccctgggaagtatcctt |
36992855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 59 - 304
Target Start/End: Original strand, 37002526 - 37002771
Alignment:
| Q |
59 |
cttagatattcttatagctaatatttagcttcccaacatatattctttaaacttaccaagttttaatcctttaggaaaaccataacttaatcacacaatt |
158 |
Q |
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| T |
37002526 |
cttagattttcttatatctaatatttagcttgccaacatatattcttaaaacttac-aagttgaaatccattaggaaaatcataacttaatcacacaatt |
37002624 |
T |
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| Q |
159 |
tgtcattttct-ggtcccatgactacatacttataaacttcatcacaattacactacacaagttcactaggatcaataaaattagtatgagatcaaggat |
257 |
Q |
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| T |
37002625 |
cgtcattttctaggtcccatgactacatacttataaacttcatctgaataacactgcacaagttcactaggatcaataaaattagtaagagctcaaggat |
37002724 |
T |
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| Q |
258 |
aaccatctaatagtaagattacacacattttgatattccctgggaag |
304 |
Q |
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| T |
37002725 |
aaccatctaatagtaagatcacgcacaatttgatatgccctgggaag |
37002771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 321 - 442
Target Start/End: Original strand, 36993021 - 36993141
Alignment:
| Q |
321 |
gggtgtgaagaagagcatactggttttggagatggaagtgggactggaatagcgagaaccattctcatctcagtggggggcattctcttggtgatagttt |
420 |
Q |
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||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||| | ||| ||| |||| |||| ||||| |
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| T |
36993021 |
gggtgtgaagaagagcatactggttttggagttgaaagagggactggaatagtgagaaccattctcatctcagt-gagggtattttcttagtgagagttt |
36993119 |
T |
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| Q |
421 |
atcgtctttgtaaatttcatta |
442 |
Q |
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| T |
36993120 |
atcatgtttgtaagttccatta |
36993141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 428 - 501
Target Start/End: Original strand, 36993151 - 36993224
Alignment:
| Q |
428 |
ttgtaaatttcattactgcaaggagattattaatccatccattgtttagcattgcagtatttataagggaattt |
501 |
Q |
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|||||| || |||||||||||||||||||||||||||| |||||||| |||| |||| ||| ||||||||||| |
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| T |
36993151 |
ttgtaagttccattactgcaaggagattattaatccataaattgtttaacattccagtctttgtaagggaattt |
36993224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37002463 - 37002510
Alignment:
| Q |
1 |
aaattcccttatgttttactcttccatgtacatcatggtatgcacata |
48 |
Q |
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|||||||||| ||||||||||| ||||||||||||| |||||||||| |
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| T |
37002463 |
aaattcccttctgttttactctgacatgtacatcatgatatgcacata |
37002510 |
T |
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