View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15492_low_2 (Length: 362)
Name: NF15492_low_2
Description: NF15492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15492_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 35044718 - 35044385
Alignment:
| Q |
18 |
catcaatttcttgatcatcaacagtggagataataacatccataaagtcacgttcatttccaggaaccctactacgtttgtgttgatcaatccaaccttg |
117 |
Q |
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| T |
35044718 |
catcaatttcttgatcatcaacagcggagataataacatccataaagtcacgttcatttccaggaaccctactacgtttgtgttgatcaatccaaccttg |
35044619 |
T |
|
| Q |
118 |
aacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaaacggcaacgaatcagatataacaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044618 |
aacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaaacggcaacgaatcagatataacaaag |
35044519 |
T |
|
| Q |
218 |
gaaccacaaagatggaagagctccctaaacgcttttcgtatttgtttgttcttttctccttccccgtcaaaacgttctccaaccaccgttctaaacatca |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044518 |
gaaccacaaagatggaagagctctctaaacgcttttcgtatttgtttgttcttttctccttccccgtcaaaacgttctccaaccaccgttctaaacatca |
35044419 |
T |
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| Q |
318 |
cgtttatcgctatatcaccaaaccatttcttcat |
351 |
Q |
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| T |
35044418 |
cgtttatcgctatatcaccaaaccatttcttcat |
35044385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 35036513 - 35036383
Alignment:
| Q |
92 |
cgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaa |
191 |
Q |
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|||||||||||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| |||| |
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| T |
35036513 |
cgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaaccatctaaaaa |
35036414 |
T |
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| Q |
192 |
acggcaacgaatcagatataacaaaggaacc |
222 |
Q |
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| T |
35036413 |
accgcaacatgtcagatataacaaatgaacc |
35036383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 35020313 - 35020176
Alignment:
| Q |
93 |
gtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaaa |
192 |
Q |
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||||||| ||||||| |||| | |||||| ||||| |||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||| | |
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| T |
35020313 |
gtttgtgctgatcaagccaaacacaaacaaagtcatctaactcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaaata |
35020214 |
T |
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| Q |
193 |
cggcaacgaatcagatataacaaaggaaccacaaagat |
230 |
Q |
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| T |
35020213 |
cggtaacatgtcagaaacaacaaatgaaccactaagat |
35020176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 35036303 - 35036254
Alignment:
| Q |
302 |
accgttctaaacatcacgtttatcgctatatcaccaaaccatttcttcat |
351 |
Q |
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||||||||| |||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
35036303 |
accgttctacacataacgttcatcgctatatcaccaaaccattttttcat |
35036254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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