View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15492_low_3 (Length: 283)

Name: NF15492_low_3
Description: NF15492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15492_low_3
NF15492_low_3
[»] chr7 (6 HSPs)
chr7 (1-52)||(18391971-18392022)
chr7 (1-51)||(18388536-18388586)
chr7 (1-52)||(6594333-6594384)
chr7 (1-51)||(6592116-6592166)
chr7 (5-51)||(32060098-32060144)
chr7 (1-51)||(1560441-1560491)
[»] chr4 (6 HSPs)
chr4 (1-52)||(7123025-7123076)
chr4 (5-51)||(7125248-7125294)
chr4 (1-51)||(8395946-8395996)
chr4 (1-52)||(8393737-8393788)
chr4 (1-52)||(5136408-5136460)
chr4 (1-51)||(5138633-5138684)
[»] chr6 (8 HSPs)
chr6 (1-54)||(25421648-25421701)
chr6 (1-52)||(34165200-34165252)
chr6 (1-51)||(6136079-6136129)
chr6 (1-51)||(34167422-34167472)
chr6 (1-52)||(33341877-33341929)
chr6 (1-52)||(6027588-6027639)
chr6 (1-52)||(13154257-13154309)
chr6 (1-52)||(13159113-13159165)
[»] chr5 (7 HSPs)
chr5 (1-52)||(25078463-25078514)
chr5 (1-52)||(25136432-25136483)
chr5 (1-52)||(40380433-40380484)
chr5 (1-51)||(40382644-40382694)
chr5 (1-52)||(16544753-16544805)
chr5 (1-52)||(16546975-16547027)
chr5 (1-51)||(10593600-10593650)
[»] chr3 (12 HSPs)
chr3 (1-52)||(4598298-4598349)
chr3 (1-52)||(4600519-4600570)
chr3 (1-52)||(10056561-10056613)
chr3 (1-52)||(10058783-10058835)
chr3 (1-52)||(10061005-10061057)
chr3 (1-52)||(10063227-10063279)
chr3 (1-52)||(10065449-10065501)
chr3 (1-52)||(10067648-10067700)
chr3 (1-52)||(25637772-25637823)
chr3 (1-51)||(3617792-3617842)
chr3 (3-52)||(10209519-10209569)
chr3 (3-51)||(10211739-10211788)
[»] chr2 (2 HSPs)
chr2 (1-51)||(12647162-12647212)
chr2 (1-52)||(13655804-13655855)
[»] scaffold0565 (1 HSPs)
scaffold0565 (1-52)||(2379-2430)
[»] chr1 (1 HSPs)
chr1 (1-51)||(44203974-44204024)
[»] scaffold0137 (1 HSPs)
scaffold0137 (1-52)||(6617-6668)
[»] chr8 (3 HSPs)
chr8 (1-52)||(15290866-15290918)
chr8 (1-52)||(15471235-15471287)
chr8 (1-51)||(42575100-42575151)


Alignment Details
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18392022 - 18391971
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18392022 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 18391971  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18388586 - 18388536
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18388586 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 18388536  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6594384 - 6594333
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6594384 tttgtattggtgtggttcgatccggccttggaggctcggggattcacaacaa 6594333  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6592166 - 6592116
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6592166 tttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 6592116  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 32060144 - 32060098
Alignment:
Q  5 tattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32060144 tattggtgtggttcgatccggccttggaggttcggggattcacaaca 32060098  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1560491 - 1560441
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  1560491 tttgtattggtgtggttcgatccgaccttggaggctcggggattcacaaca 1560441  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7123025 - 7123076
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7123025 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 7123076  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 7125248 - 7125294
Alignment:
Q  5 tattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7125248 tattggtgtggttcgatccggccttggaggttcggggattcacaaca 7125294  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8395946 - 8395996
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  8395946 tttgtattggtgtggttcgatccggtcttggaggtccggggattcacaaca 8395996  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8393737 - 8393788
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  8393737 tttgtattggtgtggttcgatccggtctttgaggtccggggattcacaacaa 8393788  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5136408 - 5136460
Alignment:
Q  1 tttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  5136408 tttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 5136460  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5138633 - 5138684
Alignment:
Q  1 tttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 51  Q
    ||||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  5138633 tttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 5138684  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25421648 - 25421701
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaagt 54  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25421648 tttgtattggtgtggttcgatccggccttggaggctcggggattcacaacaagt 25421701  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34165200 - 34165252
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34165200 tttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 34165252  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6136129 - 6136079
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  6136129 tttgtattggtatggttcgatccggccttggaggtccggggattcacaaca 6136079  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34167422 - 34167472
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  34167422 tttgtattggtgtggttcgatccgaccttggaggctcggggattcacaaca 34167472  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33341929 - 33341877
Alignment:
Q  1 tttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  33341929 tttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 33341877  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6027588 - 6027639
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||| | ||||||| | ||||||||||||||||    
T  6027588 tttgtattggtgtggttcgatccagtcttggagatccggggattcacaacaa 6027639  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13154257 - 13154309
Alignment:
Q  1 tttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||| || ||||||||| || |||||||||||||    
T  13154257 tttgtattggtgtggttcgatccgggtcttggaggtccgaggattcacaacaa 13154309  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13159113 - 13159165
Alignment:
Q  1 tttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||| || ||||||||| || |||||||||||||    
T  13159113 tttgtattggtgtggttcgatccgggtcttggaggtccgaggattcacaacaa 13159165  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25078463 - 25078514
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25078463 tttgtattggtgtggttcgatccggccttggaggtttggggattcacaacaa 25078514  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25136432 - 25136483
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25136432 tttgtattggtgtggttcgatccggccttggaggtttggggattcacaacaa 25136483  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40380433 - 40380484
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40380433 tttgtattggtgtggttcgatccggccttggaggctcggggattcacaacaa 40380484  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 40382644 - 40382694
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40382644 tttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 40382694  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16544753 - 16544805
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16544753 tttgtattggtgtggttcgatccggtccttggaggctcggggattcacaacaa 16544805  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16546975 - 16547027
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16546975 tttgtattggtgtggttcgatccggtccttggaggctcggggattcacaacaa 16547027  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10593600 - 10593650
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    ||||||||||||||||||||||||  ||||||| | ||||||| |||||||    
T  10593600 tttgtattggtgtggttcgatccgatcttggagatacggggatacacaaca 10593650  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4598349 - 4598298
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4598349 tttgtattggtgtggttcgatccgaccttggaggttcggggattcacaacaa 4598298  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4600570 - 4600519
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4600570 tttgtattggtgtggttcgatccgaccttggaggttcggggattcacaacaa 4600519  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10056561 - 10056613
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10056561 tttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10056613  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10058783 - 10058835
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10058783 tttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10058835  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10061005 - 10061057
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10061005 tttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10061057  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10063227 - 10063279
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10063227 tttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10063279  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10065449 - 10065501
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10065449 tttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10065501  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10067648 - 10067700
Alignment:
Q  1 tttgtattggtgtggttcgatccgg-ccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10067648 tttgtattggtgtggttcgatccggaccttggaggttcggggattcacaacaa 10067700  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25637772 - 25637823
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  25637772 tttgtattggtgtggttcgatccgaccttggaggtccggggattcacaacaa 25637823  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3617792 - 3617842
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  3617792 tttgtattggtgtggttcgatccgaccttggaggctcggggattcacaaca 3617842  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 10209519 - 10209569
Alignment:
Q  3 tgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  10209519 tgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 10209569  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 10211739 - 10211788
Alignment:
Q  3 tgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 51  Q
    ||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  10211739 tgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 10211788  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 12647212 - 12647162
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12647212 tttgtattggtgtggttcgatccggccttggaggctcggggattcacaaca 12647162  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13655855 - 13655804
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  13655855 tttgtattggtgtggttcgatccgaccttggaggtccggggattcacaacaa 13655804  T

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Target: scaffold0565 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2430 - 2379
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  2430 tttgtattggtgtggttcgatccgaccttggaggctcggggattcacaacaa 2379  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 44203974 - 44204024
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaaca 51  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  44203974 tttgtattggtgtggttcgatccgaccttggaggctcggggattcacaaca 44204024  T

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Target: scaffold0137 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6617 - 6668
Alignment:
Q  1 tttgtattggtgtggttcgatccggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  6617 tttgtattggtgtggttcgatccggtcttggagactcggggattcacaacaa 6668  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15290866 - 15290918
Alignment:
Q  1 tttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  15290866 tttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 15290918  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15471235 - 15471287
Alignment:
Q  1 tttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaacaa 52  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  15471235 tttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacaa 15471287  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42575151 - 42575100
Alignment:
Q  1 tttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 51  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  42575151 tttgtattggtgtggttcgatccgggtcttggaggctcggggattcacaaca 42575100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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