View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15492_low_4 (Length: 280)
Name: NF15492_low_4
Description: NF15492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15492_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 5170157 - 5170411
Alignment:
| Q |
1 |
gaataatatgtcaactctctaggtccttggcnnnnnnnagcaaagttccttcctcaagcttttttgcagctatatattaatgtatatacatttgataatg |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5170157 |
gaataatatgtcaactctctaggtccttggctttttttagcaaagttccttcctcaagcttttttgcagctatatattaatgtatatacatttgataatg |
5170256 |
T |
|
| Q |
101 |
aggaccgttctttttcaagatcaaagcatttaaacttgctcttcttttatgatagggggcatgcaatttggactctcgtgatagaaaagattaatnnnnn |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5170257 |
aggaccgttctttttcaagatcaaagcatttaaacttgctcttcttttatgatagggggcatgcaatttggactctcgtgatagaaaagattaat--aaa |
5170354 |
T |
|
| Q |
201 |
nncaggaatgttcgcacgtgaaaaccctcatgtttcatttgccatataggttgtgcctg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5170355 |
aacaggaatgttcgcacgtgaaaaccctcatgtttcatttgcc--ataggttgtgcctg |
5170411 |
T |
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