View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15493_high_2 (Length: 513)

Name: NF15493_high_2
Description: NF15493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15493_high_2
NF15493_high_2
[»] chr8 (10 HSPs)
chr8 (18-503)||(2430401-2430892)
chr8 (18-151)||(2434339-2434472)
chr8 (31-94)||(2498974-2499037)
chr8 (25-115)||(1457834-1457924)
chr8 (25-115)||(2427541-2427631)
chr8 (31-90)||(2519311-2519370)
chr8 (36-90)||(2507514-2507568)
chr8 (440-504)||(2434040-2434104)
chr8 (36-90)||(2514604-2514658)
chr8 (218-255)||(2434227-2434264)
[»] chr4 (1 HSPs)
chr4 (296-417)||(8358469-8358591)
[»] chr2 (3 HSPs)
chr2 (274-413)||(22399105-22399247)
chr2 (325-416)||(474683-474775)
chr2 (296-416)||(9253208-9253331)
[»] chr1 (1 HSPs)
chr1 (358-416)||(45682541-45682600)
[»] chr7 (1 HSPs)
chr7 (325-416)||(41317018-41317110)


Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 2430892 - 2430401
Alignment:
Q  18 actgtctacaatattcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430892 actgtctacaatattcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtg 2430793  T
Q  118 ttgcaaaaatctttgtggtgtttgtgttgtacatgtacacatctaatacaactggccacatggtctgtacattcatctaacaaattgccaaatatgtacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430792 ttgcaaaaatctttgtggtgtttgtgttgtacatgtacacatctaatacaactggccacatggtctgtacattcatctaacaaattgccaaatatgtacc 2430693  T
Q  218 ttaatttaatttcaaggaacgatttagtcttttatct------tcnnnnnnnnncacattatttttgcccttttgatccatttgatatgaatattcaagt 311  Q
    |||||||||||||||||||||||||||||||||||||      |          |||||||||||||||||||||||||||||||||||||||||||| |    
T  2430692 ttaatttaatttcaaggaacgatttagtcttttatcttttatcttcttttttttcacattatttttgcccttttgatccatttgatatgaatattcaact 2430593  T
Q  312 tttaaatgtatgatttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaatctagatttggagcttgataattc 411  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2430592 tttaaatctatgatttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaatctagatttggagcttgataattc 2430493  T
Q  412 atatgtcaattgtcaatggaccaaaatcacgtgaacaaaatatagaagaccaaatacttatatgaagttaagttaaagaaccatgagtataa 503  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2430492 atatgtcaattgtcaatggaccaaaatcacgtgaacaaaatataaaagaccaaatacttatatgaagttaagttaaagaaccatgagtataa 2430401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 2434472 - 2434339
Alignment:
Q  18 actgtctacaatattcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtg 117  Q
    |||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2434472 actgtcaacaatgttgaggtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcacttccgccatctcaggaattgtg 2434373  T
Q  118 ttgcaaaaatctttgtggtgtttgtgttgtacat 151  Q
    |  | |||||||||||||||||||||||||||||    
T  2434372 tcactaaaatctttgtggtgtttgtgttgtacat 2434339  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 2498974 - 2499037
Alignment:
Q  31 ttcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctca 94  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2498974 ttcatgtctgattctttaggaaaaccagatacatagtccttcagaatcacttgcttgttcctca 2499037  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 1457924 - 1457834
Alignment:
Q  25 acaatattcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattg 115  Q
    |||| ||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||| |||| || |||||| | ||||||||    
T  1457924 acaacattcatgtctgattccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtttctcacttgcgccatgttaggaattg 1457834  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 2427631 - 2427541
Alignment:
Q  25 acaatattcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattg 115  Q
    |||| ||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||| |||| || |||||| | ||||||||    
T  2427631 acaacattcatgtctgattccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtttctcacttgcgccatgttaggaattg 2427541  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 2519311 - 2519370
Alignment:
Q  31 ttcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc 90  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  2519311 ttcatgtctgattctttaggaaaaccagacacatagtgtttcagaattacttgcttgttc 2519370  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 2507514 - 2507568
Alignment:
Q  36 gtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc 90  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  2507514 gtctgattctttaggaaaaccagacacatagtgtttcagaagcacttgcttgttc 2507568  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 504
Target Start/End: Complemental strand, 2434104 - 2434040
Alignment:
Q  440 acgtgaacaaaatatagaagaccaaatacttatatgaagttaagttaaagaaccatgagtataat 504  Q
    ||||||| || ||||| |||||||||||||||| |||||||||||||||||||||  ||||||||    
T  2434104 acgtgaaaaacatataaaagaccaaatacttatctgaagttaagttaaagaaccacaagtataat 2434040  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 2514604 - 2514658
Alignment:
Q  36 gtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc 90  Q
    |||||||||||||||||||||||||||||| |  ||||||| |||||||| ||||    
T  2514604 gtctgattctttaggaaaaccagacacataatgtttcagaagcacttgctggttc 2514658  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 2434264 - 2434227
Alignment:
Q  218 ttaatttaatttcaaggaacgatttagtcttttatctt 255  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  2434264 ttaatttaatttcaagtaacgatttagttttttatctt 2434227  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 8358469 - 8358591
Alignment:
Q  296 atatgaatattcaagttttaaatgtatgatttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaatc-tagat 394  Q
    |||||||| |||||| ||||| |  ||||||| ||| ||| |||||||| | |||||| | ||| ||||||||||  | ||||||||||||||| |||||    
T  8358469 atatgaattttcaagctttaattccatgattttttttcttatgacctcttaatctttaaacttacggtctttcatatatgtttgcatatgaatcttagat 8358568  T
Q  395 ttggagcttgataattcatatgt 417  Q
    ||| ||||||| |||||||||||    
T  8358569 ttgaagcttgaaaattcatatgt 8358591  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 413
Target Start/End: Complemental strand, 22399247 - 22399105
Alignment:
Q  274 ttttgcccttttgatccatttg-atatgaatattcaagttttaaatgtat-gatttatttccttgtgacctctcagtctttagatttatggtctttcatc 371  Q
    |||||| |||||| | |||||| |||||||| |||||| || |||| ||| | |||| || || ||||||||||||| || | ||||||||||||||| |    
T  22399247 ttttgctcttttggtacatttgcatatgaattttcaagcttcaaatatattgttttaatttctagtgacctctcagttttaaaatttatggtctttcacc 22399148  T
Q  372 caagtttgcatatgaatc-tagatttggagcttgataattcat 413  Q
     | |||| ||| |||||| |||||||| ||||||| |||||||    
T  22399147 tatgtttacatttgaatcttagatttgaagcttgaaaattcat 22399105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 474683 - 474775
Alignment:
Q  325 tttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaatc-tagatttggagcttgataattcatatg 416  Q
    ||||||| | |||||  |||||||||| | || ||||||| |||| ||| ||||||||||||||| || ||||| ||||||| ||||||||||    
T  474683 tttattttcctgtgagttctcagtcttcaaatctatggtccttcacccatgtttgcatatgaatcttaaatttgaagcttgaaaattcatatg 474775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 9253331 - 9253208
Alignment:
Q  296 atatgaatattcaagttttaaatgtatgatttatttc--cttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaatc-tag 392  Q
    ||||||||||||||| ||||||| |||||||| |||   ||  || ||||||| |||| | || |||||||||||||| | ||||  |||| |||| |||    
T  9253331 atatgaatattcaagctttaaatctatgattttttttttctcatggcctctcaatcttcaaatatatggtctttcatctatgttttgatataaatcttag 9253232  T
Q  393 atttggagcttgataattcatatg 416  Q
    |||||  |||||| ||||||||||    
T  9253231 atttgatgcttgaaaattcatatg 9253208  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 416
Target Start/End: Complemental strand, 45682600 - 45682541
Alignment:
Q  358 tatggtctttcatccaagtttgcatatgaatc-tagatttggagcttgataattcatatg 416  Q
    |||||||||||||||| ||||||||||||||| || ||||  ||||||| ||||||||||    
T  45682600 tatggtctttcatccatgtttgcatatgaatcttatatttaaagcttgaaaattcatatg 45682541  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 41317018 - 41317110
Alignment:
Q  325 tttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatatgaa-tctagatttggagcttgataattcatatg 416  Q
    ||||||| ||||||||||| || |||| | || ||||||||||||| || |||||| |||||| | |||||||  ||||||| ||| ||||||    
T  41317018 tttattttcttgtgacctcccaatcttcaaatctatggtctttcattcatgtttgcctatgaattttagatttaaagcttgaaaatacatatg 41317110  T

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