View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15493_low_1 (Length: 533)
Name: NF15493_low_1
Description: NF15493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15493_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 30 - 528
Target Start/End: Original strand, 53562063 - 53562557
Alignment:
| Q |
30 |
aataacgcggctgaagatgctactcatttatttcttcattgtgaaggggtgaaggtggtttggtgtaagatcatggaatggttggactttaattttataa |
129 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562063 |
aataacacggctgaagatgctactcatttatttcttcattgtgaaggggtgaaggtggtttggtgtaagatcatggaatggttggactttaattttataa |
53562162 |
T |
|
| Q |
130 |
ttccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtgttggaattatttggcatgctgttatttg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53562163 |
ttccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagacccgtaaaggtgttagaattatttggcatgctgttatttg |
53562262 |
T |
|
| Q |
230 |
gagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttgtcttggaggtggagt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
53562263 |
gagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----cagtcaaggttttgtcttggaggtggagt |
53562358 |
T |
|
| Q |
330 |
ttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtgaggttgttttgtttgggagagctgct |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562359 |
ttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtgaggttgttttgtttgggagagctgct |
53562458 |
T |
|
| Q |
430 |
gctgcgtggtgtctggctgtgttcattgaggttgtgcagttctgttgtggtgctgctggtttttctgtttgcagcagctcttatgctttctgtgctgct |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53562459 |
gctgcgtggtgtctggctgtgttcattgaggctgtgcagttctgttgtggtgctgctggtttttctgtttgcagcagctcttatgctttctgtgttgct |
53562557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 102 - 404
Target Start/End: Complemental strand, 38185570 - 38185268
Alignment:
| Q |
102 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtg |
201 |
Q |
| |
|
||||| ||| |||| || ||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||| ||||| ||||| |||| || | |
|
|
| T |
38185570 |
atggagtggctggaattcaattttataattccaccgaatctgtttatcacgtgggaatgttggaattgagcggtttataataaaaagatttgtaagggag |
38185471 |
T |
|
| Q |
202 |
ttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatc |
301 |
Q |
| |
|
| | ||||||||||||| | |||||||| ||||||||||| ||||| || | || ||| |||||||| || | || ||||| || ||||||| |
|
|
| T |
38185470 |
tgaggcttatttggcatgccgccatttggagcatatggaaagctaggaatgatataacttttaataatgcagtgttggattgtgaggcattgctggaatc |
38185371 |
T |
|
| Q |
302 |
tgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcgg |
401 |
Q |
| |
|
| | ||||| ||| | ||||||||| |||| || ||| |||| |||||||| | |||||| |||||||||| |||||||| ||||| || ||| ||||| |
|
|
| T |
38185370 |
tattaaggtgttggcctggaggtggtgttttggtagaataaacttgccggcatgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcgg |
38185271 |
T |
|
| Q |
402 |
tga |
404 |
Q |
| |
|
||| |
|
|
| T |
38185270 |
tga |
38185268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 88 - 404
Target Start/End: Complemental strand, 34821540 - 34821223
Alignment:
| Q |
88 |
tttggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataa |
187 |
Q |
| |
|
||||| ||||| ||||||| ||||| ||| ||||| ||||||| || |||||| | ||||| ||||| | ||||||||||| || ||| ||||| || |
|
|
| T |
34821540 |
tttggagtaagctcatggagtggttagacattaatattataatccctccgaatttgtttatcatgtggaattgttggaatggtgcggttcacaataaaaa |
34821441 |
T |
|
| Q |
188 |
gatccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgag |
287 |
Q |
| |
|
||| ||||| || || | |||||||||| || | |||||||| ||||||||||||||||| || | ||||| || ||||||||| | || ||||| |
|
|
| T |
34821440 |
gattcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttagattttgag |
34821341 |
T |
|
| Q |
288 |
gatctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaagg |
387 |
Q |
| |
|
| ||||||||||| | |||||||||| ||||||||| |||| || |||| | ||||| | | |||||| ||||| |||| |||||||| |||| |
|
|
| T |
34821340 |
gcactgttggaatcaataaaggttttgtggtggaggtggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaatccaaagg |
34821241 |
T |
|
| Q |
388 |
a-ctgtttgatgcggtga |
404 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
34821240 |
atttgtttgatgcggtga |
34821223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 90 - 404
Target Start/End: Original strand, 4903679 - 4903993
Alignment:
| Q |
90 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
189 |
Q |
| |
|
||||||||| | ||||| |||||||| ||||||||| ||||||| || ||||| |||||| ||||| ||||||||||||| | |||| || || ||| |
|
|
| T |
4903679 |
tggtgtaagcttatggagtggttggaatttaattttttaattcctcctaatctgtttattatgtggcaatgttggaatggtgagtttttgaacaaaaagc |
4903778 |
T |
|
| Q |
190 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
289 |
Q |
| |
|
| || | |||| | || | ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| |
|
|
| T |
4903779 |
tgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggagga |
4903878 |
T |
|
| Q |
290 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
389 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||| |||||| || || || | | ||||||||||| || ||||||| ||||||| ||||| |
|
|
| T |
4903879 |
gctgttggaatctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggat |
4903978 |
T |
|
| Q |
390 |
tgtttgatgcggtga |
404 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
4903979 |
tgtttgttgcggtga |
4903993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 382
Target Start/End: Original strand, 1557167 - 1557447
Alignment:
| Q |
102 |
atggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataagatccgtaaaggtg |
201 |
Q |
| |
|
||||| ||| |||||||||||||| |||| || || ||||| |||||| ||||||||||||||| |||||||||| | ||||| ||||| || || |||| |
|
|
| T |
1557167 |
atggactggctggactttaattttttaatccccccaaatctgtttattatgtgggaatgttggattggagctgttgtcaataaaaagattcggaagggtg |
1557266 |
T |
|
| Q |
202 |
ttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatc |
301 |
Q |
| |
|
| | ||||||||||||| ||||||| || |||||||| ||||| |||| | ||||||||||| | | || |||| | ||| |||||||| |
|
|
| T |
1557267 |
tgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatgacattgtgttcaataatgcgactttagaccttgaagctctcttggaatc |
1557366 |
T |
|
| Q |
302 |
tgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcc |
382 |
Q |
| |
|
| ||||| ||||| ||||||||| ||||||| ||||| | ||||| || | |||||| ||||| |||| |||||||| |
|
|
| T |
1557367 |
aattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatcc |
1557447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 404
Target Start/End: Complemental strand, 22153878 - 22153564
Alignment:
| Q |
90 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
189 |
Q |
| |
|
||||||||| | ||||| |||||||| ||||||||| |||| || | ||||| |||||| || |||||||||||||||| | |||| || || ||| |
|
|
| T |
22153878 |
tggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagc |
22153779 |
T |
|
| Q |
190 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
289 |
Q |
| |
|
| || |||| | || | ||||||||||| | ||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |
|
|
| T |
22153778 |
tgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaa |
22153679 |
T |
|
| Q |
290 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
389 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |
|
|
| T |
22153678 |
gctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtt |
22153579 |
T |
|
| Q |
390 |
tgtttgatgcggtga |
404 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
22153578 |
tgtttgttgcggtga |
22153564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 404
Target Start/End: Complemental strand, 22209793 - 22209479
Alignment:
| Q |
90 |
tggtgtaagatcatggaatggttggactttaattttataattccaccgaatctttttattttgtgggaatgttggaatggagctgttttaaataataaga |
189 |
Q |
| |
|
||||||||| | ||||| |||||||| ||||||||| |||| || | ||||| |||||| || |||||||||||||||| | |||| || || ||| |
|
|
| T |
22209793 |
tggtgtaagcttatggagtggttggaatttaattttttaatccctcttaatctgtttattatgcgggaatgttggaatggtgagtttttgaacaaaaagc |
22209694 |
T |
|
| Q |
190 |
tccgtaaaggtgttggaattatttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgagga |
289 |
Q |
| |
|
| || |||| | || | ||||||||||| | ||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |
|
|
| T |
22209693 |
tgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaa |
22209594 |
T |
|
| Q |
290 |
tctgttggaatctgtcaaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggac |
389 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |
|
|
| T |
22209593 |
gctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtt |
22209494 |
T |
|
| Q |
390 |
tgtttgatgcggtga |
404 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
22209493 |
tgtttgttgcggtga |
22209479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University