View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15493_low_3 (Length: 441)
Name: NF15493_low_3
Description: NF15493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15493_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 424
Target Start/End: Original strand, 17254019 - 17254435
Alignment:
| Q |
4 |
ccacctccacaacctcccccaaccatagaagtactcataataaccatgttattatccttgagagcactagaacttcttgtgacttgtcgcctagttttag |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17254019 |
ccacctccacaacctcccccagccatagaagtactcataataaccatgttattatccttgagagcactagaacttcttgtgacttgtcgcctagttttag |
17254118 |
T |
|
| Q |
104 |
tgacttgagcattctttaacttgtttctataatcttcatcgcttatatttttggtaggtctagaacaacagcttcccatatcgtaaaattttatatcaca |
203 |
Q |
| |
|
| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17254119 |
ttactttagaattctttaacttgtttctataatcttcatcgcttatatttttggtaggtctagaacaacagcttcccatatcgtaaaattttatatcaca |
17254218 |
T |
|
| Q |
204 |
caaaaagattgtactatgtatgtcctgatgcacaaaggtagctcttgtatttataagagagaatgtaacaaacctaagataagggagaacgttacaagcc |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |
|
|
| T |
17254219 |
caaaaagattgtactatgta----ctgatgcataaaggtaggtcttgtatttataagagagaatataacaaacctaagataagggagaacgtaacaaacc |
17254314 |
T |
|
| Q |
304 |
ggagatataagagagatgtatttaattttatggctagtaacaaatatttnnnnnnngattgtattatctactaatgcacggatgt-agtctagtatttaa |
402 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17254315 |
ggagatataagagagatgtattt-attttatggctcgtaaaaaatattttaaaaaagattgtattatctactaatgcacggatgtaagtctagtatttaa |
17254413 |
T |
|
| Q |
403 |
actaatgataagtgagaatgtt |
424 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17254414 |
actaatgataagtgagaatgtt |
17254435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 17254453 - 17254503
Alignment:
| Q |
262 |
gagaatgtaacaaacctaagataagggagaacgttacaagccggagatata |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
17254453 |
gagaatgtaacaaacctaagataagggagaacgaaacaaacgggagatata |
17254503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 17247139 - 17247188
Alignment:
| Q |
28 |
atagaagtactcataataaccatgttattatccttgagagcactagaact |
77 |
Q |
| |
|
||||||||| ||||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
17247139 |
atagaagtagtcatagtaaccatgttataatacttgagagcactagaact |
17247188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 17247197 - 17247237
Alignment:
| Q |
74 |
aacttcttgtgacttgtcgcctagttttagtgacttgagca |
114 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
17247197 |
aacttcttctgacttgtcctctagttttagtgacttgagca |
17247237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 17258988 - 17259060
Alignment:
| Q |
125 |
tgtttctataatcttcatcgcttatatttttggtaggtctagaacaacagcttcccatatcgtaaaattttat |
197 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||| | ||| |||| ||||||||||||||||||||||| |
|
|
| T |
17258988 |
tgtttctataatcttcatcgtttactttttctctagggttggaaaaacaacttcccatatcgtaaaattttat |
17259060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University