View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15493_low_5 (Length: 302)
Name: NF15493_low_5
Description: NF15493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15493_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 36412083 - 36412357
Alignment:
| Q |
18 |
ccatccacatttcatgtagaaatcaatcagtgcagttccaagctcaagatcatattccaacccattttcctcaacataagaatgaatccatttcccttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412083 |
ccatccacatttcatgtagaaatcaatcagtgcagttccaagctcaagatcatattccaacccattttcctcaacataagaatgaatccatttcccttct |
36412182 |
T |
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| Q |
118 |
tcaaaagcacccaccattgtacacgcgttaagaacactcaccaaaagagccccattgaatttcacacatgcacaacccttgtccttcttcttcaactccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36412183 |
tcaaaagcacccaccattgtacacgcgttaagaacactcaccaaaagagccccattgaatttcaaacatgcacaacccttgtccttcttcttcaactccc |
36412282 |
T |
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| Q |
218 |
ggaatagttgaactccctcactgaaaaaaccgttcctaacatacccagaaaccatagcactatacgacgcttcat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412283 |
ggaatagttgaactccctcactgaaaaaaccgttcctaacatacccagaaaccatagcactatacgacgcttcat |
36412357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 52096575 - 52096849
Alignment:
| Q |
18 |
ccatccacatttcatgtagaaatcaatcagtgcagttccaagctcaagatcatattccaacccattttcctcaacataagaatgaatccatttcccttct |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
52096575 |
ccatccacatttcgcgtagaaatcaatcagtgcagttccaagctcaagatcatattccaaaccgttttcctcaacataagaatgaatccatttcccttct |
52096674 |
T |
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| Q |
118 |
tcaaaagcacccaccattgtacacgcgttaagaacactcaccaaaagagccccattgaatttcacacatgcacaacccttgtccttcttcttcaactccc |
217 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
52096675 |
tcaaaagcacccatcactgtacacgcgttaagaacactcaccaaaagagccccattgaacttcacacgtgcacgacccttgtccttcttcttcaactccc |
52096774 |
T |
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| Q |
218 |
ggaatagttgaactccctcactgaaaaaaccgttcctaacatacccagaaaccatagcactatacgacgcttcat |
292 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52096775 |
ggaatagttgaactccctcactgaaaaaactgttcctaacatacccagaaaccatagcactattcgacgcttcat |
52096849 |
T |
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