View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15493_low_6 (Length: 238)
Name: NF15493_low_6
Description: NF15493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15493_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 11895634 - 11895444
Alignment:
| Q |
14 |
caaagggcaatgaattctatgtttcatgattttatttatacctttatgctagtatacattgacgacatagtcgtaaaatcctcgttgaaaaatagtcatt |
113 |
Q |
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| T |
11895634 |
caaagggcaatgaattttatgtttcatgattttatttatacctttatgctagtaaacattgacgacatagtcgtaaaatcctcgttgaaaaatagtcatt |
11895535 |
T |
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| Q |
114 |
tagacaaccttcgacaatcctttgagagaatgaggaaaagtatagattaaaaataaatccattgaaatgtgctttttgtgtacctgcaagtga |
206 |
Q |
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| T |
11895534 |
taaacaaccttcgacaatcctttaagggaatgaggaaa--tatagattaaaaatgaatccattcaaatgtgctttttgtgtacctgcaagtga |
11895444 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 17806988 - 17806954
Alignment:
| Q |
14 |
caaagggcaatgaattctatgtttcatgattttat |
48 |
Q |
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| T |
17806988 |
caaagagcaatgaattctatgtttcatgattttat |
17806954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 25114435 - 25114401
Alignment:
| Q |
14 |
caaagggcaatgaattctatgtttcatgattttat |
48 |
Q |
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| T |
25114435 |
caaagagcaatgaattctatgtttcatgattttat |
25114401 |
T |
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